Chloracidobacterium validum: J8C06_14415
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Entry
J8C06_14415 CDS
T07355
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cvl
Chloracidobacterium validum
Pathway
cvl03030
DNA replication
cvl03410
Base excision repair
cvl03420
Nucleotide excision repair
cvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J8C06_14415 (ligA)
03410 Base excision repair
J8C06_14415 (ligA)
03420 Nucleotide excision repair
J8C06_14415 (ligA)
03430 Mismatch repair
J8C06_14415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvl03032
]
J8C06_14415 (ligA)
03400 DNA repair and recombination proteins [BR:
cvl03400
]
J8C06_14415 (ligA)
Enzymes [BR:
cvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J8C06_14415 (ligA)
DNA replication proteins [BR:
cvl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J8C06_14415 (ligA)
DNA repair and recombination proteins [BR:
cvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J8C06_14415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J8C06_14415 (ligA)
MMR (mismatch excision repair)
DNA ligase
J8C06_14415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J8C06_14415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
DNA_ligase_ZBD
Rng_hyd_C
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QUW04231
LinkDB
All DBs
Position
2:813822..815879
Genome browser
AA seq
685 aa
AA seq
DB search
MLNRSGSDTASLARQPLTRDDARRAIEQLRAEIARHDELYYQQHAPVISDYDYDQLVKQL
QALEAAFPEFITLDSPTQRVGGRPSEGFPSVQHRIRMMSLDNVYSPEELREWETRCRRVY
DQAFDYVAELKIDGLSLSLHYTDGLLTEAVTRGDGTTGDLVTENARTIRQLPLRLAQPLA
ADLEVRGEVYLPLSSFRRLNAELEVEGEKPFANPRNAAAGTMKLLDARIAAGRRLAMFCY
ELFADGVKPFETHWETLDWLRQAGFPVNPYARQCANLDAVLAYCTEMESQREARDYDTDG
VVVKVNQIRAQDELGATAKAPRWAVAYKFAPMQAQTRLRGVTWQVGRLGTLTPVAELEPV
FVAGTTVARASLHNEDQIRRLDVRLGDRVIVEKSGDIIPQVVGVVAADRTADAPPIKAPV
FCPGCPERQVRLVRPEGEVAWRCPETNCPTKLRQSLQHFAARTAMDIEGLGEVLVEKLVR
DGLVTDVADLYALTAEQVAALERLGDKSAANLMAQIERSKTAGLERLIFALGIPDVGRRK
AQLLAQHFGSVEALAQASEAELVAVRDIGPATAQGIRQWFADERHRQMVARLAAAGVVTH
LDAARSDAVAQLAGKQFVLTGTLPTLTRDEATARIEAAGGRVTSAVSKKTDYVVVGDNPG
SKLDKAKALGIAILDESGLLELLSP
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatcgttcaggttcagataccgcatccttggctcgtcagccgttgacgcgcgat
gacgcacgccgcgccatcgaacagttgcgtgcagaaatagcacggcatgatgagttgtat
taccaacagcacgcgccggtcatctccgattacgactacgatcaactcgtcaagcagttg
caagcccttgaggcggcttttcctgagttcatcacgctggacagtccgacccagcgggtt
ggcggtcgcccaagcgaagggttcccatccgttcagcaccggattcggatgatgtcactc
gacaacgtctatagtccggaagaactccgggagtgggaaactcgctgtcgccgggtttat
gatcaagcgttcgattatgtcgccgaactcaagattgatgggttgagtttatccctacac
tacacggatgggctgcttaccgaagctgttacgcggggtgacgggacaacgggcgacctt
gttacggaaaatgctcgcacgattcggcaacttccgctccgcctggcccagccgctcgcc
gccgaccttgaagtgcggggtgaggtttacttgccactgtccagctttcgccgactcaac
gccgagcttgaagtcgaaggcgaaaaaccctttgccaatcctcgtaacgccgcagccggc
acgatgaagctgctcgatgcgcggattgcggccggccgccggctggccatgttttgttac
gagttgtttgccgatggcgtcaaacccttcgagacacactgggaaacgctcgactggctt
cggcaggcgggtttcccggtcaatccgtatgcacggcagtgcgcaaacttagacgccgtg
ctggcctattgcaccgagatggaaagccagcgcgaggcacgcgactacgatacggatggc
gtcgtggtcaaggtcaaccaaattcgcgcacaggacgaactcggcgcaacggcaaaggct
ccccgctgggccgtcgcctacaagtttgcgcccatgcaagcccaaacgcgcctgcgtggg
gtgacgtggcaggttgggcggctgggcacgctcacaccggtcgctgaactcgaacccgtg
tttgtggccgggacgaccgttgcacgggcgtcactccataacgaagaccagattcggcgg
ctcgacgtacggttgggtgaccgcgtcatcgttgagaaaagcggtgacatcatcccccag
gttgttggtgttgtggctgccgaccgcaccgcagacgccccccctatcaaggccccagtg
ttttgcccgggctgccctgagcgtcaggtaaggctggttcggccagagggtgaagttgcc
tggcggtgcccagaaacgaactgcccgaccaagctccggcagagcttacagcactttgcc
gcccggacggccatggacatcgaagggcttggtgaagtgcttgtggaaaagctggtgcga
gatgggcttgtcaccgatgttgccgacctctacgcgctgacggccgaacaggttgccgcg
ctcgaacggctgggggacaagtcggcggccaacctcatggcgcaaatcgaacggagtaaa
acggccggactggagcggttgatctttgcgctcgggattcctgatgtcgggcggcgcaag
gcgcaactactggcgcaacactttggctcggtggaggcgctggcccaggcgtcggaagcc
gaactggttgccgtccgagacattgggccggcaacggcgcagggcatccgccagtggttt
gccgacgaacggcaccggcagatggtagcgcgactagcggcggcaggggtcgttacccac
ttggacgccgcgcgctcagacgcggtggcgcaactggccggcaagcagtttgtcttgacc
gggacacttccaaccctgacccgtgatgaagccacggcccgcatcgaagccgccggcgga
cgggtgacgagcgccgtcagcaagaaaaccgattacgtggtcgtgggtgacaacccgggc
tccaagctggacaaagccaaggcgcttggcattgcaattctcgacgaatccggcttgctc
gaactcctgtcaccctga
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