Crassostrea virginica (eastern oyster): 111102211
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Entry
111102211 CDS
T09197
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111102211
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111102211
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111102211
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
111102211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
DUF6444
Motif
Other DBs
NCBI-GeneID:
111102211
NCBI-ProteinID:
XP_022290574
UniProt:
A0A8B8AKL0
LinkDB
All DBs
Position
1:complement(48394159..48426283)
Genome browser
AA seq
2032 aa
AA seq
DB search
MATNRRSKANETELEEDDAFVYVFDRRDKDLPDVKIPTGGLFSFEDFKDRVREALQIKKK
DNFVIATTNREEIKDDESWDDIDNGDTLYVLKKINQELCAPANERVNFVPHYDTIVKGGL
YEYYASEGQNPLPYAFAELIDNALSATAENSGPRNIDILLHFDDGKPLNHAIYIIDNGKG
MSPRQLNNWAIYRLSKFKRKDKRGKVSFIEGEDDDEELEQKQAPLCLNSDISYFGVGGKQ
AVFFIGSSTRMITKPKDAQDVHELTMSKEEFKQREINKESVYSGYIRNRKVADSSHIPAE
NEVLCSIISEEKKKESFTVVEIGGISSGHAAYLRQHLGDWTRQLAHIYHYYIHGPEGNKD
LDDESEAKSKNSFNNINIRVKLFVKGKPATEINLRDIYDDMQTLFVRNSASEFYFKATAE
GTGVVEGIIRYHPFLYDSETYPADINDPRGETDFDEHDYAVNMKPARGRRPIFECYWNGR
LIPYTTIEEFDWCSEPKKSRNIAAECWNRISGVLFTNDHFQVSTNKLTFLDLEMRLRDKS
TIFSRIINGQEKRTSIEKEFLNWLKECHEQHDKQIHFTGYGGQVVRADLPKQRQTPWGQF
KSVIWDNKTFKVGQMVKILRTTPVLLGTIKNFFLYGEHEGDTFATGGEIEIQQEPQSLYN
EVRVVPLSRLDRLCNSASVKRYLEEEESKLPAILIVTWPEGDEVRPNEKRPAGKTIGALK
IEIENRKGEKIQKLPGTSAQASHKKLLVELKVIWHSATGDQTIVSHISQHGKNWPYWFRK
MENVHNLGPHTLQLQVVLNESGSTIYAGKSLPSHQIKFTITEAEPEKFTVGMLEGPFRIG
QPFQIPLVFRDAFNNITKPVQSSTPTIQAKDLDITYEKTIARGTSLILSGIVAKGVISDK
HTGSYGVTITVPGLREDAQSLKLRVLPGLPKVLNVLPESEMTIENGTAPIFRVEVQDLSG
NITTDKNLIVTCKFKDLPTPLVYSLDCSASGFGNITGDPILLQKVKDQHKLNAKFEVSSK
KDVPAVERTVVVTPSNSISHIEIKQEENNRQRILKQGESIMGRAGEMITGLTLVLYDEAG
RQAKIDEKIFPKIKVNWTPKLNQEMLLSGNLPPIKVPASVTDLKYCQVAIHDKSNVEFSF
TVNAFPAEPNQIKCKCQGLAVVQIGEMLKHEIQITVKDKFGNEITDLPKNSTHEFQVTGD
GLQADLVKVVSNKNGFAITNVQFEGGKIGTKDVKVTWRELRDFVRIEMVAGPPETLSLPG
WDCEEAITVLNESKLPRSIVVQLCDQFGNPAKLSDVRVQLTKEGKIKLYPPPVPLKTNAQ
GQVDFGVLTVSGPRGTYELQPKAFHGKAEPILGPKIQVQLQPNLMKPTSLSVEYDKKAAF
KVGDKLPEFTVKVLTEDDQPMASAKVSSLSLKLWKMDATVSSGPPSRALSFSPEAVKGSP
GVFVFKNRKTPENAAVHQIMITYYDGQYELFSNVMTVDIKAAPPMQLLPVDNPGTPTVSN
TRAANTRCVVRNLRLELRDQHGNSSGTGYSGKVKVEICGPDDVTEVPCFVGGSRTLDVAL
NNGTCYLNNLTLQENAPGLDGQEYKLRCEVFCSLIPKNKSIPALEIPFLFYNDVKKQSQM
SQLSKQRDNLQKVINTYHSLFDTTDLLTKELQTSVKEAKQDEDRIKEELRNLRVSMQQLS
NIENVENLIATKKMEKEKYLQMKRRSCGLTQLPSNPGVIGKIGHLAEIADPDVARVLSWH
MSSDIDCVVTRTTQTAKEVYKETGGKQQVLPLDSIFKKSLPDWNKPLPHTKYRSGWRPQG
NPSYARNFLEFPQHRLECQTVFGMLLGDTLILDELDSANAYRQEIVKFTHCPTILTREGD
RIRSNGKFGGLMNKAVPIEKLRGAVFGEPLNPQYKEAETVVETLQRFKAAMQKTNKAKEE
LQDQSSYIDLPEMKNKRKECQEAEKQLMEIEQKLGMTSTRSQTPRASTTPEMTTPNKRAR
LSGRTAVNGTETTTTTTTTPTPSPQFTPTRQSKRLASMTPTMEDGRKKLRKT
NT seq
6099 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaacagacgaagcaaggcaaacgaaactgagttagaagaggatgatgcgttc
gtatacgtgtttgacaggcgagacaaagatctccctgatgtcaaaatacctacgggaggg
ttatttagctttgaagattttaaagatcgagtgagagaggccttacaaatcaaaaagaag
gacaattttgttattgcaacaacaaacagagaagaaatcaaagatgatgaaagttgggat
gacatagataatggagacacattgtatgtactcaagaaaatcaatcaagagctatgtgcc
cctgccaatgagagggttaattttgtaccacattatgacactattgtgaaaggaggattg
tatgagtattatgcatcagaaggacaaaacccattaccgtatgcttttgctgaattgatt
gacaatgctttgtctgcaacagcagagaattcaggtcccaggaacatagacatcttattg
cactttgatgatgggaagcctttaaaccatgccatttatatcattgataatgggaaaggc
atgtcaccaagacaactcaacaactgggccatttacagactctccaaatttaaacgcaaa
gacaaaagaggaaaagtgagctttattgagggagaggatgatgacgaggagctggaacaa
aaacaagcacccttatgtctgaacagtgacatctcttactttggagtgggaggaaagcaa
gctgtattctttattggcagttctacaaggatgatcacaaaacctaaggatgctcaggat
gtgcatgagctgaccatgtccaaagaggaattcaaacagagagagatcaacaaagagtct
gtttacagtggctacatccgaaacaggaaggtcgcagattcatctcacattcctgcagaa
aatgaagtgttgtgcagcattatcagtgaggagaagaagaaggagagttttactgtggtg
gagattggtggaattagctctggccatgcggcttatctccgccaacacctcggagactgg
accagacaattagcgcatatttaccactattatatccatggaccagaaggaaacaaagac
ttagatgatgaatctgaagcaaagtccaagaattcattcaacaacatcaatatcagggtt
aaattatttgtaaaaggaaagccagccacagaaatcaatttgcgggacatctatgatgac
atgcagaccctttttgtcagaaactcggccagtgagttctacttcaaggctacagcagag
ggaacaggggttgtggagggaattatccgttaccacccgttcctgtacgacagcgaaact
tatcctgcagatatcaatgacccaagaggggagaccgactttgatgaacatgattatgct
gtcaacatgaaaccagctaggggaaggcgacctatttttgaatgttattggaatggaaga
cttattccatatactaccattgaagagtttgattggtgctctgagcccaaaaagagtaga
aatattgcagcagaatgctggaacagaatttcgggtgtgctgttcactaatgaccatttc
caggtcagcaccaacaagctgacctttctagacctggagatgagattacgagataaaagc
accatattcagcaggattataaatggacaagagaagagaacatcaattgaaaaagagttt
ctgaattggttgaaagagtgccatgagcagcatgataaacagatacatttcactgggtat
ggagggcaggtggtgagagcagacctccctaaacagagacagaccccctggggccagttc
aaaagcgtcatctgggacaacaagacattcaaagtgggacaaatggtgaagatcctgaga
acaacccctgtgctactgggtacaatcaaaaacttcttcctgtatggggagcatgagggg
gacacatttgcaacaggtggggagatagagatccaacaagaaccccagtccctgtacaat
gaagtgagggtggtgcctctctccagactggacagactttgcaactccgcctctgtcaag
cgctacctggaggaagaggaatccaaattaccagcaatattgatagtcacttggccagaa
ggggatgaagtcagacccaatgagaaaagaccagctgggaaaactatcggagcattgaag
atagaaattgagaacagaaaaggagaaaaaattcagaaactcccaggaacaagtgctcaa
gcctcccacaaaaagttgctggtggagttgaaggttatctggcatagtgccactggagac
cagaccattgtctcacacatcagtcagcatggaaagaactggccttattggtttagaaaa
atggaaaatgtacacaaccttggtccccataccctacagctgcaagtggtcctgaatgag
agtggctccactatttatgctgggaagagtctgccctctcatcaaatcaagttcaccatc
acagaggctgaaccagaaaagtttacagtaggaatgttagagggaccatttagaattgga
caaccttttcagataccacttgtgttcagagatgcgttcaacaacatcacaaaaccagta
caatcatccacaccaactatccaagccaaggatctggatattacttatgagaagacaatt
gcacggggcaccagtcttatcttgtctggaatagtcgccaagggtgtcatcagtgacaaa
catactgggagttatggtgtaacaattacagtaccaggacttagagaagatgctcagagt
ttaaaactgagagtattgccaggattacccaaggttttaaatgttctgcctgaaagcgaa
atgaccatcgagaatggcacagcaccaattttccgggtggaagtgcaggacttgtcagga
aatatcaccacagacaaaaacctcatcgttacctgtaagtttaaagacctgcccacccct
ttggtgtattctttggactgctctgcttctggctttgggaatatcactggagatcctatt
ctactgcaaaaggtcaaggatcaacataaactaaatgcaaaatttgaagtttcgagtaag
aaggatgttcctgctgtggagaggacagtggtggtcactcccagtaactccatatcccac
attgaaatcaaacaggaagagaacaacagacagaggatactcaagcagggagagagcatc
atgggcagggccggcgagatgatcacagggctaactttggtactgtatgatgaggctgga
agacaggccaagattgatgagaaaatattccccaagattaaggtgaactggacccccaag
ttaaaccaggagatgttattatcggggaacctgccccccattaaggtccctgcctctgtg
actgacctcaagtactgccaggtggccatccatgacaagtccaatgtagaattcagcttc
acagtcaatgcatttcctgctgaaccaaaccagataaagtgtaaatgtcagggattggca
gttgtacagatcggggaaatgttgaagcatgaaatacaaatcacagtcaaggacaaattt
ggcaatgagataacagatctgccaaagaactctactcatgaattccaagtcactggagat
gggctgcaggcagatctagtcaaagttgtttcaaataagaatgggtttgccatcactaat
gttcagtttgaggggggtaagattggaacgaaggacgtgaaggtgacctggcgggaactg
agggactttgtgagaattgagatggtggccggtccccccgaaacactcagcctacccggc
tgggactgtgaggaggccatcactgtactcaatgagagcaagctaccccggtctattgta
gtccagctctgtgatcagtttggtaacccagccaaactgagtgatgttcgtgttcagtta
accaaagagggcaaaatcaagctgtaccccccaccagtccctctgaaaaccaatgctcag
ggacaagtggactttggagttcttaccgtctcaggaccaagaggtacatatgaactccag
cctaaagccttccacggtaaggctgagccaatactgggccctaaaattcaggtccagctc
cagcctaatctcatgaaaccaacctctctctccgtggagtacgataagaaggcagccttc
aaagtgggagataaacttccagagttcactgtgaaggtcctgacggaggacgaccagccc
atggccagtgccaaggtgtccagcctctccctcaagctgtggaagatggatgccaccgtg
tcctctgggcccccgtccagggcattatccttctctcctgaggcagttaagggtagccca
ggggtgtttgtgttcaaaaataggaaaaccccagagaatgctgcagttcaccagataatg
atcacttattacgatggccagtacgagttgttcagtaatgtgatgactgttgacattaaa
gcagcaccaccaatgcagcttctacctgtggataatcctggcactcccacagtgtccaac
accagggctgccaacaccagatgtgtggtccgcaacttgaggctagagctgagggatcag
catggcaattcttcaggaactggttacagtgggaaagtgaaagtagagatttgtggccct
gatgatgtgacggaggttccttgctttgttggaggaagcagaacgcttgacgttgcactt
aacaatggaacttgctaccttaataacttgaccctgcaagagaatgcccctggacttgat
ggccaggaatacaagttgcgctgtgaagtcttttgttctctcatccccaaaaataaatcc
ataccagccttggaaatcccattcctcttttacaatgatgtcaagaagcagtctcagatg
tcccagctgtccaaacagagagataacctacagaaggtgatcaatacataccactcgctg
tttgacaccacggacctgctcaccaaagaactccaaacttctgtcaaggaggccaagcaa
gatgaagatcgcatcaaagaagaacttcgtaatctccgtgtcagcatgcaacagctgagc
aacattgaaaatgttgaaaatctaatagcaaccaaaaagatggagaaggagaagtattta
caaatgaaaaggaggtcatgtggtttaacccagttaccatcaaatcctggggtgatcggc
aagattggacatttggcagagatagccgaccctgatgtagccagggtattatcgtggcac
atgtcatcagacatagactgtgtggtcacccgtactacccaaacggctaaagaagtctac
aaggagactggtggcaaacaacaagttcttcctcttgactccatcttcaagaaaagctta
ccagactggaacaagcccctcccgcacactaagtacaggtccggctggagaccccaagga
aatccctcctatgcccgaaacttcctggaattccctcaacacagattggaatgtcaaaca
gtatttgggatgctattgggagataccttaatcctggatgaattggattctgcaaacgct
tacagacaagagatagtgaaattcacacactgtccaacaatactcactcgagaaggggac
cgcatccgaagcaatggtaaatttgggggtctgatgaacaaggctgttcccattgagaag
ctgaggggagctgtgtttggggagccactgaacccccagtacaaagaggctgagacagtt
gtagaaactcttcagagatttaaagcagcaatgcagaaaacgaacaaagcaaaagaagag
ctgcaagaccagtccagttacattgatctgccagagatgaagaacaagaggaaggaatgc
caggaggcagaaaagcagctgatggaaattgaacagaagcttggtatgacatccacaaga
tctcagacccccagagccagtaccacacccgagatgaccacacccaataagcgagctcgt
ctctctggtcgtacggctgtgaatgggacagagaccaccaccaccaccaccaccaccccc
acccccagtcctcagttcacccccaccagacagagtaagcgactcgcgtccatgactccc
acaatggaggatggaaggaagaaattgaggaaaacatga
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