Crassostrea virginica (eastern oyster): 111106827
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Entry
111106827 CDS
T09197
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111106827
09123 Folding, sorting and degradation
03018 RNA degradation
111106827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111106827
03041 Spliceosome [BR:
cvn03041
]
111106827
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111106827
mRNA degradation factors
5'-3' decay
Lsm complex
111106827
Spliceosome [BR:
cvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111106827
Complex C
U2 snRNP components
111106827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
DUF8043
YfkB
Peptidase_M16_M
DUF8104
Motif
Other DBs
NCBI-GeneID:
111106827
NCBI-ProteinID:
XP_022297362
UniProt:
A0A8B8BFW1
LinkDB
All DBs
Position
8:complement(7755834..7768771)
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AA seq
103 aa
AA seq
DB search
MADDQEQQAPVQNVEEPLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEET
VTTVEIDEETFEEIYKTTKRNIPMLFVRGDGVILVSPPMRTGT
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgatcaagagcagcaagctcctgtgcaaaatgtggaagagcctttggatctg
attcgtctcagtcttgatgaaagaatttacgtgaagatgagaaatgaacgagagttaaga
ggaagactgaatgcttatgatcaacatctgaacatgatactgggagatgtggaagaaacg
gtcaccactgtagagatcgatgaagaaaccttcgaggaaatctacaagacaacaaaaaga
aacatccccatgctgtttgtcaggggggatggggtcattctggtgtctccgcccatgaga
acagggacttag
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