Crassostrea virginica (eastern oyster): 111110150
Help
Entry
111110150 CDS
T09197
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111110150
09123 Folding, sorting and degradation
03018 RNA degradation
111110150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111110150
03041 Spliceosome [BR:
cvn03041
]
111110150
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111110150
mRNA degradation factors
5'-3' decay
Lsm complex
111110150
Spliceosome [BR:
cvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111110150
Complex C
U2 snRNP components
111110150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
DUF8043
YfkB
Peptidase_M16_M
DUF8104
Motif
Other DBs
NCBI-GeneID:
111110150
NCBI-ProteinID:
XP_022302245
UniProt:
A0A8B8BFW1
LinkDB
All DBs
Position
8:complement(7062292..7066528)
Genome browser
AA seq
103 aa
AA seq
DB search
MADDQEQQAPVQNVEEPLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEET
VTTVEIDEETFEEIYKTTKRNIPMLFVRGDGVILVSPPMRTGT
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgatcaagagcagcaagctcctgtgcaaaatgtggaagagcctttggatctg
attcgtctcagtcttgatgaaagaatttacgtgaagatgagaaatgaacgagagttaaga
ggaagactgaatgcttatgatcaacatctgaacatgatactgggagatgtggaagaaacg
gtcaccactgtagagatcgatgaagaaaccttcgaggaaatctacaagacaacaaaaaga
aacatccccatgctgtttgtcaggggggatggggtcattctggtgtcccctcccatgaga
acagggacttag
DBGET
integrated database retrieval system
