KEGG   Crassostrea virginica (eastern oyster): 111121030
Entry
111121030         CDS       T09197                                 
Name
(RefSeq) TNF receptor-associated factor 6-like isoform X1
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn04120  Ubiquitin mediated proteolysis
cvn04140  Autophagy - animal
cvn04144  Endocytosis
cvn04620  Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111121030
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    111121030
   04140 Autophagy - animal
    111121030
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    111121030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cvn04131]
    111121030
   04121 Ubiquitin system [BR:cvn04121]
    111121030
Enzymes [BR:cvn01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     111121030
Membrane trafficking [BR:cvn04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    111121030
Ubiquitin system [BR:cvn04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    111121030
SSDB
Motif
Pfam: zf-TRAF zf-C3HC4 zf-RING_UBOX zf-C3HC4_4 zf-C3HC4_2 zf-Nse TRAF3_RING zf-RING_2 zf-RING_5 zf-TRAF_2 Sina_ZnF zf-C3HC4_3 RING_XB3-XBAT31 XAF1_C zf_UBZ
Other DBs
NCBI-GeneID: 111121030
NCBI-ProteinID: XP_022317836
UniProt: A0A8B8CRL0
LinkDB
Position
2:51606174..51609293
AA seq 281 aa
MASRRDQMTSPPATTRGYDAAFCSELDRKYICPVCLSALHQPMQTACGHRFCKSCIQGVI
NGRTQAKCPVDNVVFKCKDELFEDKAFQREVLSQTVKCGNHGLGCAWSGELRTYQDHDGR
CLYISVPCDNHCGLILPRFRLRDHAETCERRPVDCQHCNSQIPFTDLTKHQVLACQNLPV
QCTLCGQAGIRRKDISSHIDITTGDCPSTVVPCQYASFGCQFQNKRRDMVEHYREAANHH
ILLLVGKISDQEQRISTLESELLRIQQEQDVQKQTLQQLQP
NT seq 846 nt   +upstreamnt  +downstreamnt
atggccagcagaagagaccagatgacctcgcccccggccactacgagaggatacgatgcc
gccttctgttcggagcttgacaggaagtacatttgtcccgtgtgtttgtccgcccttcac
cagcccatgcagactgcttgtggacaccgcttctgtaaatcctgcattcagggggttatc
aatggaagaacacaagccaagtgtccagtggataatgttgtcttcaaatgtaaagacgag
ttgtttgaggacaaggccttccagcgagaggttttgtcccagacggtgaagtgtggaaac
catggacttggctgcgcgtggagcggggagctccgaacctatcaggaccacgatggccgc
tgtctatacatctcggtaccgtgcgacaatcactgtggattgatcctcccccgttttcgc
ctgagggaccacgccgagacctgcgagcggcgaccggtagactgtcagcactgcaattca
cagattcctttcacggacctcacgaaacaccaggtgctggcgtgtcagaacctccccgtc
cagtgcaccctgtgcggtcaggcggggatccgcaggaaggacatctcctcccacatcgac
atcaccacgggcgactgcccctccacagtcgtcccctgccagtacgcctccttcggctgc
cagttccagaacaagagacgtgacatggtggagcattacagagaagcagccaaccaccac
atcctgttgcttgttgggaaaatctccgaccaggagcagagaatttccaccctggaaagt
gagctgctacgcattcagcaggaacaagatgtccaaaaacagaccctccaacaactccaa
ccctag

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