Crassostrea virginica (eastern oyster): 111122008
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Entry
111122008 CDS
T09197
Name
(RefSeq) short transient receptor potential channel 3-like isoform X1
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvn04040
]
111122008
Ion channels [BR:
cvn04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
111122008
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_3
Ank
DUF3734
DUF7542
Motif
Other DBs
NCBI-GeneID:
111122008
NCBI-ProteinID:
XP_022319232
UniProt:
A0A8B8CTQ0
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Position
2:complement(38393448..38433868)
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AA seq
1071 aa
AA seq
DB search
MSNFERHSYLLAEMEDTEDYHLAVDYGSADHKRASAMPSQGSLFTNFEEVQLTDEERVYL
NAASMGDVGIVRQSLEEPDGALNVNCVDYMGRNALHLAIDSEKIGVIEILIDNLNFNCIE
EALLHAISKGATKIVKLIIEHPNFMAGEDRFKSFGVTEAFFRTEEKSQFPPDITPLILAA
QYNNHEIVQMFLSRNHKIEKPHSISCTCTDCATKQNYDALKRSRSRLNAYRALASPAYMA
LSSPDPIMATFELRQEMMKLAEVEKEFKNEYLALLEQCMNFACELIDLCRGTQEVEAVVS
EGTGCGEPLARLKMAIRYQEKKFVAHPNCQQHMTTLWYGSEMSFLQSLSLWKQLAFILLF
LPCIPFLCVAYIIFPNTKPGEVMRCPVTKFITHATSHICFLILLAAATFRLTESGVTITT
TTDIHNPTFESLTKEEKIQSLLKETLRPANTLLTHVQLCIVFWILGLLWIECKQLYSTGL
KAYVTVYQKLIDFSVLSMYLASYVLRFFTEYRIAQADRCFNGTHVARELLWQENYTYFNW
KLDEIKSPKNAPINYFMEASRFHWKPNDPEIVSDVLFAIANVISFARTTYLMPAFEVLGP
LQISLGRMIGDITRFMVLFTLVLFAFMVGLHNLYWYYGAQRIKMVLNDKTIYVHAAEAFQ
GLRQTFYSLFWSMFGQVSITDITVRHPGPTGERSCVQIDGGKIMCTEEIRNESVYGGPTP
ESVNMERSTDIVEQVGMYLFALYHVVIIIVLINMLIAMMSHSFEDIQTDCDVEWKFARTK
LWLNYMDEGSTLPVPFNMIPTPKSLFYAWKFCKDLLAISDVSWLEYHKNKKQTFIKKRRE
RVCKTLDLKVEDTSYSDIMQRLVKRYLFKMERAKDEKESVKDGVPNLRNEDVEIVETNDT
PPPVPEAPSRIPYATPIHEEEEDDTQSIHKNLRSGIGSKRKLCSRSNMRRVSSSVAPSPT
TLVIPQLDAIQRSQKLLDVRLQHLQANSKENNRIIDDIEFLRRVMTENQKALFNIIHALG
NMQGEIVDLVKCLSSTPVPDKNHSHMNSSNSVSKSSGKKRTSQQDDEESEV
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacttcgagcggcattcctatcttttggctgaaatggaggacacagaagactac
catctggccgtggactacggatcggcggatcataagagggcgtcagccatgccctcccag
ggatctctgttcacaaacttcgaggaagtccagcttacagatgaggagagggtgtacctc
aatgccgcttccatgggggacgtggggattgtccggcagtccctggaggaaccggacggg
gctctcaacgtgaactgtgtggactatatggggaggaatgccctacatctcgcgattgac
agcgagaagataggagtcatcgagatccttatcgacaacctgaactttaactgtatagaa
gaggctctgctacatgcaattagtaaaggcgcaacgaaaatcgttaaactcatcattgaa
cacccaaacttcatggccggcgaggatcggttcaaaagttttggagttactgaggcattt
ttcaggacagaagagaaaagccaatttccccccgacattacacctttaattttagctgct
caatataataaccatgaaattgttcaaatgtttttgtcaaggaatcataaaattgaaaaa
ccacatagcatatcatgcacgtgcacggactgtgcaaccaaacagaactatgacgcttta
aagaggtcacggtcacggttgaatgcctacagggctctggcaagtcctgcgtacatggcg
ctgtccagtcctgaccccattatggcaacatttgaacttcgacaggaaatgatgaaatta
gcagaggtagagaaggaattcaagaatgagtacctcgctctgttggaacagtgtatgaac
ttcgcctgtgaattgatagatctttgtcgaggtactcaggaagtcgaggccgtcgtgagt
gagggcaccggatgtggagaacccctagcccgactgaaaatggccatcagatatcaagaa
aagaagtttgtggcccatcccaattgccaacagcacatgaccaccctctggtacgggtct
gagatgagcttcctccagtccctcagtctgtggaaacaactcgccttcatccttctcttt
ctcccctgtattccgtttctctgtgtcgcttacatcatttttccaaacactaaacccggg
gaggtcatgcgatgccccgtgacaaagttcatcacgcatgccacatctcacatctgtttc
ctcatactattggctgccgcaacattccgactgacggaaagtggcgttaccataacaacc
accacagacatacacaacccaacattcgaatctcttaccaaagaagaaaagatacagagt
ttattaaaagaaaccttaagacctgcaaataccttgttaacccacgttcaattatgtatt
gtattctggatattaggtttgctatggatagagtgtaaacagttgtacagcacgggttta
aaggcttacgtcacagtttaccagaagctgatagatttcagtgtcttatccatgtattta
gcttcctatgtcctgcgattcttcacggagtacagaatagcacaggccgatagatgtttt
aatggtacccacgtagcgagagagctcctctggcaggagaactacacctacttcaactgg
aaactagatgaaatcaagagtccgaagaatgcacctatcaactattttatggaggcatca
cgctttcattggaagcccaacgatccggaaatcgtctccgatgtgctctttgccatcgcc
aatgtgataagttttgcacgaactacctacctcatgccagcattcgaggtcctgggacct
ctgcaaatttcgctgggtcgaatgattggagatattacaagatttatggttttgttcacc
ttggttttgtttgcttttatggttggtcttcataatctgtattggtactatggcgctcag
agaattaagatggttcttaacgataaaacaatatatgtacatgcagctgaagctttccaa
ggattacgtcagaccttctacagtcttttctggtcaatgtttggacaagtcagtatcact
gatatcaccgttagacaccctggtcccacaggagagcgtagttgtgttcaaatagacgga
ggaaaaataatgtgtacagaggaaattcgcaacgagtcagtgtatggcggacctactcca
gagtctgtgaacatggagagaagtaccgatatcgtagaacaggtggggatgtacctattc
gctctctatcacgtcgtcatcatcattgttttgatcaacatgctaattgcaatgatgagt
cactcattcgaggacatccagactgactgtgacgtggagtggaagtttgccaggaccaag
ctatggctgaattacatggacgaggggagtaccctgccggtcccattcaacatgataccc
acccccaaatccctattctacgcctggaagttctgtaaagacttgctggccatatcagac
gtgtcctggctagagtatcacaagaataagaaacagaccttcatcaagaaaagaagagaa
cgagtgtgtaagaccctggacctgaaagtggaggatacctcttacagtgacatcatgcag
aggttggtcaaacggtacctgttcaaaatggaacgcgcaaaggacgaaaaagaatcagtt
aaggatggagtacctaacttgaggaacgaagatgttgaaattgtagagacgaatgacacg
ccccctccagtacccgaggccccaagcagaattccgtatgccacgcccattcacgaggaa
gaagaagatgatacacaatctattcataaaaatctcaggtcaggcattggatcgaaacgg
aagttgtgcagccgttcgaacatgcgcagagtgtccagtagtgttgctccttcccccaca
actttagtgataccacagctagacgctattcaacgatcacagaaactcttagacgtacgt
ttacaacaccttcaagccaatagtaaagaaaacaatcgcatcatagacgatattgaattc
ctaaggcgggtcatgactgagaaccagaaggccctatttaatatcatacatgctctggga
aatatgcagggtgaaatagtagaccttgtcaagtgtttatcttcaacgccagtaccagac
aaaaaccatagtcacatgaattcttcgaattctgtttccaagtcttcagggaaaaagcgc
acaagtcaacaggatgacgaggaaagtgaagtgtga
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