Crassostrea virginica (eastern oyster): 111123252
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Entry
111123252 CDS
T09197
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111123252
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111123252
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111123252
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
111123252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Ig_GEX2_N
DUF6444
Motif
Other DBs
NCBI-GeneID:
111123252
NCBI-ProteinID:
XP_022321190
UniProt:
A0A8B8D064
LinkDB
All DBs
Position
1:complement(50133228..50157357)
Genome browser
AA seq
2032 aa
AA seq
DB search
MATNRRSKANETELEEDDAFVYVFDRRDKDLPDVKIPTGGLFSFEDFKDRVREALQIKKK
DNFVIATTNREEIKDDESWDDIDNGDTLYVLKKINQELCAPANERVNFVPHYDTIVKGGL
YEYYASEGQNPLPYAFAELIDNALSATAENSGPRNIDILLHFDDGKPLNHAIYIIDNGKG
MSPRQLNNWAIYRLSKFKRKDKRGKVSFIEGEDDDEQLEQKQAPLCLNSDISYFGVGGKQ
AVFFIGNSTRMITKPKDAQDVHELTMSKEEFKQREINKESVYSGYIRNRKVADSSHIPAE
NEVLCNIISEEKKKESFTVVEIGGISSGHAAYLRQHLGDWTRQLAHIYHYYIHGPEGNQD
LDDESEAKSKNTFNNINIRVKLFVKGKPATDINLRDIYDDMQTLFVRNSASEFYFKATAE
GTGVVEGIIRYHPFLYDSETYPADISDPRGETDFDEHDYAVNMRPARGRRPIFECYWNGR
LIPYTTIEEFDWCSEPKKSRNIAAECWNRISGVLFTNDHFQVSTNKLTFLDLEMRLRDKS
TIFSRIINGQEKRTSIEKEFLNWLKECHEQHDKQIHFTGYGGQVVRADLPKQRQTPWGQF
KSVIWDNKTFKVGQMVKILRTTPVLLGTIKNFFLYGEHEGDTFATGGEIEIQQEPQSLYN
EVRVVPLSRLDRLCNSASVKRYLEEEESKLPAILIVTWPEGDEVRPNEKRPAGKTIGALK
IEIENRKGEKIQKLPGTSAQASHKKLLVELKVIWHSATGDQTIVSHISQHGKNWPYWFRK
MENVHNLGPHTLQLQVVLNESGSTIYAGKSLPSHQIKFTITEAEPEKFTVGMLEGPFRIG
QPFQIPLVFRDAFNNITKPVQSSTPTIQAKDLDITYEKTIARGTSLILSGIVAKGVISDK
HTGSYGVTITVPGLREDAQSLKLRVLPGLPKVLNVLPESEMTIENGTAPIFRVEVQDLSG
NITTDKNLIVTCKFKDLPTPLVYSLDCSASGFGNITGDPILLQKVKDQHKLNAKFEVSSK
KDVPAVERTVVVTPSNSISHIEIKQEENSRQRILKQGESIMGRAGEMITGLTLVLYDEAG
RQAKIDEKIFPKIKVNWTPKLNQEMLLSGNLPPIKVPASVTDLKYCQVAIHDKSNVEFSF
TVNAFPAEPNQIKCKCQGSAVVQIGEMLKHEIQITVKDKFGNEITDLPKNSTHEFQVTGD
GLQADLVKVVSNKNGFAITNVQFEGGKIGTKDVKVTWRELRDFVRIEMVAGPPETLSLPG
WDCEEAITVLNESKLPRSIVVQLCDQFGNPAKLSDVRVQLTKEGKIKLYPPPVPLKTNAQ
GQVDFGVLTVSGPRGTYELQPKAFHGKAEPILGPKIQVQLQPNLMKPTSLSVEYDKKAAF
KVGDKLPEFTVKVLTEDDQPMASAKVSSLSLKLWKMDATVSSGPPSRALSFSPEAVKGSP
GVFVFKNRKTPENAAVHQIMITYYDGQYELFSNVMTVDIKAAPPMQLLPVDNPGTPTVSN
TRAANTRCVVRNLRLELRDQHGNSSGTGYSGKVKVEICGPDDVTEVPCFVGGSRTLDVAL
NNGTCYLNNLTLQENAPGLDGQEYKLRCEVFCSLIPKNKSIPALEIPFLFYNDVKKQSQM
SQLSKQRDNLQKVINTYHSLFDTTDLLTKELQTSVKEAKQDEDRIKEELRNLRVSMQQLN
NIENVENLIATKKMEKEKYLQMKRRSCGLTQLPSNPGVIGKIGHLAEIADPDVARVLSWH
MSSDIDCVVTRTTQTAKEVYKETGGKQQVLPLDSIFKKSLPDWNKPLPHTKYRSGWRPQG
NPSYARNFLEFPQHRLECQTVFGMLLGDTLILDELDSANAYRQEIVKFTHCPTILTREGD
RIRSNGKFGGLMNKAVPIEKLRGAVFGEPLNPQYKEAETVVETLQRFKAAMQKTNKAKEE
LQEQSSYIDLPEMKNKRKECQEAEKQLMEIEQKLGMTSTRSQTPRASTTPEMTTPNKRAR
LSGRTAVNGTETTTTTTTTPTPSPQFTPTRQSKRLASMTPTMEDGRKKLRKT
NT seq
6099 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaacagacgaagcaaggcaaacgaaactgagttagaagaggatgatgcgttc
gtatacgtgtttgacaggcgagacaaagatctccctgatgtcaaaatacctacgggaggg
ttatttagctttgaagattttaaagatcgagtgagagaggccttacaaatcaaaaagaag
gacaattttgttattgcaacaacaaacagagaagaaatcaaagatgatgaaagttgggat
gacatagataatggagacacattgtatgtactcaagaaaatcaatcaagagctatgtgcc
cctgccaatgagagggttaattttgtaccacactatgacactattgtgaaaggaggattg
tatgagtattatgcatcagaaggacaaaacccattaccgtatgcttttgctgaattgatt
gacaatgctttgtctgcaacagcagagaattcaggtcccaggaacatagacatcttattg
cactttgatgatgggaagcctttaaaccatgccatttatatcattgataatgggaaaggc
atgtcaccaagacaactcaacaactgggccatttacagactctccaaatttaaacgcaaa
gacaaaagaggaaaagtgagctttattgagggagaggatgatgacgagcagctggaacaa
aaacaagcacccttatgtctgaacagtgacatctcttactttggagtgggaggaaagcaa
gctgtattctttattggcaattctacaaggatgatcacaaaacctaaggatgctcaggat
gtgcatgagctgaccatgtccaaagaggaattcaaacagagagagatcaacaaagaatct
gtttacagtggctacatccgaaacaggaaggtggcagactcatctcacatacctgcagaa
aatgaagtgttgtgcaacatcatcagtgaggagaagaagaaggagagttttactgtggtg
gagattggtggaattagctctggccatgccgcttatctccgccaacacctcggagactgg
accagacaattagcgcatatttaccactattatatccatggaccagagggaaaccaagac
ttagatgatgaatctgaagcaaagtccaagaatacattcaacaacatcaatatcagggtt
aaattatttgtaaaaggaaagccagctacagatatcaatttgcgggacatctatgatgac
atgcagaccctctttgtcagaaactcggccagtgagttctactttaaggctacggcagag
gggacaggggttgtggagggaattatccgttaccacccgttcctgtacgacagcgaaact
tatcctgcagatatcagtgacccaagaggggagaccgactttgatgaacacgattatgca
gtcaacatgagaccagctaggggaaggcgacctatttttgaatgttattggaatggaaga
cttattccatatactaccattgaagagtttgattggtgctctgagcccaagaagagtaga
aatattgcagcagaatgctggaacagaatttcgggtgtgctgttcactaatgaccatttc
caggtcagcaccaacaagctgacctttctagacctggagatgagattacgagataaaagt
accatattcagcaggattataaatggacaagagaagagaacatcaattgaaaaagagttt
ctgaattggttgaaagagtgccatgagcagcatgataaacagatacatttcactgggtat
ggagggcaggtggtgagagcagacctccctaaacagagacagaccccctggggccagttc
aaaagcgtcatctgggacaacaagacattcaaagtgggacaaatggtgaagatcctgaga
acaacccctgtgctactgggtacaatcaaaaacttcttcctgtatggggagcatgagggg
gacacatttgcaacaggtggggagatagagatccaacaagagccccagtccctgtacaat
gaagtgagggtggtgcctctctccagactggacagactttgcaactccgcctctgtcaag
cgctacctggaggaagaggaatccaaattaccagcaatattgatagtcacttggccagaa
ggggatgaagtcagacctaatgagaaaagaccagctgggaaaactatcggagcattgaag
atagaaattgagaacagaaaaggagaaaaaattcagaaactcccaggaacaagtgctcaa
gcctcccacaaaaagttgctggtggagttgaaggttatctggcatagtgccactggagac
cagaccattgtctcacacatcagtcagcatggaaagaactggccttattggtttagaaaa
atggaaaatgtacacaaccttggtccccataccctacagctgcaagtggtcctgaatgag
agtggctccactatttatgctgggaagagtctgccctctcatcaaatcaagttcaccatc
acagaggctgaaccagaaaagtttacagtaggaatgttagagggaccatttagaattgga
caaccttttcagataccacttgtgttcagagatgcgttcaacaacatcacaaaaccagtg
caatcatccacaccaactatccaagccaaggatctggatattacttatgagaagacaatt
gcacggggcaccagtcttatcttgtctggaatagtcgccaagggtgtcatcagtgacaaa
catactgggagttatggtgtaacaattacagtaccaggacttagagaagatgctcagagt
ttaaaactgagagtattgccaggattacccaaggttttaaatgttctgcctgaaagtgaa
atgaccattgagaatggcacagcaccaattttccgggtggaagtgcaggacttgtcagga
aatatcaccacagacaaaaacctcatcgttacctgtaagtttaaagacctgcccacccct
ctggtgtattctttggactgctctgcttctggctttgggaatatcactggagatcctatt
ctactgcaaaaggtcaaggatcaacataaactaaatgccaaatttgaagtttcgagtaag
aaggatgttcctgctgtggagaggacagtggttgtcactcccagtaactccatatcccac
attgaaatcaaacaggaagagaacagcagacagaggatactcaagcagggagagagcatc
atgggcagggctggcgagatgatcacagggctaactttggtactgtatgatgaggctgga
agacaggccaagattgatgagaaaatattccccaagattaaggtgaactggacccccaag
ttaaaccaggagatgttattatcggggaatctgccccccattaaggtccctgcctcagtg
actgacctcaagtactgccaagtggccatccatgacaagtccaatgtggaattcagcttc
acagtcaatgcatttcctgctgaaccaaaccagataaagtgtaaatgtcagggatcggca
gttgtacagatcggggaaatgttgaagcatgaaatacaaatcacagtcaaagacaaattt
ggcaatgagataacagatctgccaaagaactctactcatgaattccaagtcactggagat
gggctgcaggcagatctagtcaaagttgtttcaaataagaatgggtttgccatcactaat
gttcagtttgaggggggtaagattggaacgaaggacgtgaaggtgacctggcgggaactg
agggactttgtgaggattgagatggtggccggtccccccgaaacactcagcctacccggc
tgggactgtgaggaggccatcactgtactcaatgagagcaagctaccccggtctatcgta
gtccagctctgtgatcagtttggtaacccagccaaactgagtgacgttcgtgttcagtta
acaaaggagggcaaaatcaagctgtaccccccaccagtccctctgaaaaccaatgctcag
ggacaagtggactttggagttcttaccgtctcaggaccaagaggtacatatgaactccag
cctaaagccttccacggtaaggccgagccaatactgggccctaaaattcaggtccagctc
cagcctaatctcatgaaaccaacctctctctctgtggagtacgataagaaggcagccttc
aaagtgggagataaacttccagagttcactgtgaaggtcctgacggaggacgatcagccc
atggccagtgccaaggtgtccagcctctccctcaagctgtggaagatggatgcaaccgtg
tcctctgggcccccgtccagggcattatccttctctcctgaggcagttaagggtagtcca
ggggtgtttgtgttcaaaaataggaaaaccccagagaatgctgcagttcaccagataatg
atcacttattacgatggccagtacgagttgttcagtaatgtgatgactgttgacattaaa
gcagcaccaccaatgcagcttctacctgtggataatcctggcactcccacagtgtccaat
accagggctgccaacaccagatgtgtggtccgcaacttgaggctggagctgagggatcag
catggcaattcctcaggaactggttacagtgggaaagtgaaagtagagatttgtggccct
gacgatgtgacggaggttccctgctttgtcgggggaagcagaacgcttgatgttgcactt
aacaatggaacttgctaccttaataacttgaccctgcaagagaatgcccctggacttgat
ggccaggaatacaagttgcgctgtgaagtcttttgttctctcatccccaaaaataaatcc
ataccagccttggaaatcccattcctcttttacaatgatgtcaagaagcagtctcagatg
tcccagctgtccaaacagagagataacctacagaaggtgatcaatacataccactcgctg
tttgacaccacggacctgctcaccaaagaactccaaacttctgtcaaggaggccaagcaa
gatgaagatcgcatcaaagaagaacttcgtaatctccgtgtcagcatgcaacagctgaac
aacattgaaaatgttgaaaatctaatagcaaccaaaaagatggagaaggagaagtattta
caaatgaaaaggaggtcatgtggtttaacccagttaccatcaaatccaggggtgatcggc
aagattggacatttggcagagatagccgaccctgatgtagccagggtattatcgtggcac
atgtcatcagacatagactgtgtggtcacccgtactacccaaacggctaaagaagtctac
aaggagactggtggcaaacaacaagttcttcctcttgactccatcttcaagaaaagctta
ccagactggaacaagcctctcccgcacactaagtacaggtccggctggagaccccaagga
aatccctcctatgcccgaaacttcctggaattccctcagcacagattggaatgtcaaaca
gtatttgggatgctattgggagataccttaatcctggatgaattggattctgcaaatgct
tacagacaagagatagtgaaattcacacactgtccaacaatactcactcgagaaggggac
cgcatccgaagcaatggtaaatttgggggtctgatgaacaaggctgttcccattgagaag
ctgaggggagctgtgtttggggagccactgaacccccagtacaaagaggctgagacagtt
gtagaaactcttcagagatttaaagcagcaatgcagaaaacaaacaaagcaaaagaagag
cttcaagaacagtccagttacattgatctgccagagatgaagaacaagagaaaggaatgc
caggaggcagaaaagcagctgatggaaattgaacagaagcttggtatgacatccacaaga
tctcagacccccagagccagtaccacacccgagatgaccacacccaataagcgagctcgt
ctctctggtcgtacagctgtgaatgggacagagaccaccaccaccaccaccaccaccccc
acccccagtcctcagttcacccccaccagacagagtaagcgactcgcgtccatgactccc
acaatggaggatggaaggaagaaattgaggaaaacttga
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integrated database retrieval system
