Crassostrea virginica (eastern oyster): 111123728
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Entry
111123728 CDS
T09197
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04137
Mitophagy - animal
cvn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111123728
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
111123728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111123728
04121 Ubiquitin system [BR:
cvn04121
]
111123728
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111123728
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
111123728
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
111123728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
TRAF3_RING
TRAF_BIRC3_bd
zf-RING_UBOX
zf-C3HC4_4
CEP104_ZnF
zf-C3HC4_2
ATG16
TRAF2_zf
zf-RING_6
Sina_ZnF
DUF5357
Histone_HNS_N
DUF951
Motif
Other DBs
NCBI-GeneID:
111123728
NCBI-ProteinID:
XP_022321974
EnsemblRapid:
LOC111123728
UniProt:
A0A8B8D379
LinkDB
All DBs
Position
3:complement(29383660..29387634)
Genome browser
AA seq
519 aa
AA seq
DB search
MSEVGLPVGGYPTEIFKNGFDVKILCNSCNRVLRDPVQSYCGHRFCRNCISAITSSGNQV
RCKSCIEEGVDNEDYSIIKEDQLFPDNALRREMFSMEANCSNPGCTWMGKFRDFEKHVKE
CKYQPIPCPNCGDSVEVSKMKSHVENECPKRPVTCKHCSLSTRQDQLEQHKKECPKRPIK
CESCGKKKIPRDKIQEHKDSDCPNQKLPCLAGCEGVERRQFITHIEEKPGFHIQQIMEVL
SRLSDDFKSEQIMRTNNNMQQNNNNNNSTTTVFTSNDLAQSASSTETDATKIQTLEIKVG
TFEGIVTTLHREAERILGVLDDRQVEMDDLKKENEEKSQKIRELERKLANNEVQVMQLNQ
RVLSSDVCSYNGELVWRIDKWSEQRAKAVAGSVTSVFSPPFYTSKYGYKMCVRIYPNGDG
MGKNTHVSIFFAILRSDYDPVLSWPFSKRVRFTVFDQTSGIHITDSFRTDPNSSSFQRPT
TDMNIASGCPLFLPLTRLNGNNGFVKDDVMFIKTKVEDI
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggtcggattaccagttggagggtatcccacagaaatatttaaaaatggcttt
gatgtcaagattctgtgcaactcctgcaatagggtcctgagggaccctgtccaaagttac
tgcggacatcgattttgccggaattgcatatccgctatcacaagttcggggaaccaggtc
agatgcaaatcttgcatagaagaaggggtggacaatgaggattacagcataatcaaggaa
gaccagcttttccctgataatgcattaagacgagaaatgttcagcatggaagccaactgt
tcaaatcctggttgcacttggatgggtaaattccgcgattttgagaaacacgtgaaggaa
tgtaagtatcagcccataccgtgcccaaattgtggggactccgtggaggttagcaagatg
aagagtcacgtggaaaatgagtgtcccaagagaccggtcacgtgtaaacactgctcctta
agcaccagacaggaccagttagagcaacacaagaaagagtgtccaaagcgtccgataaag
tgtgaaagctgcggcaaaaagaaaatccccagggataagatccaagaacacaaagattca
gattgtcctaatcaaaaacttccgtgtttggctgggtgtgaaggggttgaacgtcgtcaa
tttatcacacacattgaagagaaacctggatttcatattcaacaaattatggaggttttg
tccagactttcagacgatttcaaatctgaacaaatcatgcgtaccaacaacaacatgcaa
caaaacaacaacaacaacaacagtacaacaacagtatttacaagcaatgatcttgcacaa
tcggcaagcagcacggagactgatgcaactaaaattcagacgttagaaataaaagttggc
acgttcgaagggattgtcacaacgttacatagagaagccgagcgaatactcggtgtttta
gatgaccgtcaggtagaaatggatgatctcaagaaagaaaacgaggaaaaatcacaaaaa
attcgggaactggagagaaaactagccaacaacgaggtgcaagtgatgcaactgaaccaa
agagttctctcaagcgatgtttgttcttataatggcgaattggtttggcgcattgataaa
tggagcgaacaacgcgccaaggcggtggctgggagcgtcactagcgtcttctcgccgcca
ttttacacgtctaaatacggctacaaaatgtgtgtcaggatataccccaatggagacggc
atgggtaagaatacgcacgtgtccattttctttgctatattgagaagtgactacgatcca
gtcctgtcttggccgtttagcaaaagagtccgtttcacggtctttgatcagacgagcgga
attcacatcacggattcatttcgaacagaccccaacagctcttccttccaacgccctacg
acagacatgaacatcgctagtggctgtcctttgtttctgcccttgacccgcttaaatgga
aacaacgggtttgtgaaggacgatgtcatgtttattaaaacaaaggtggaggatatttga
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