Crassostrea virginica (eastern oyster): 111125920
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Entry
111125920 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04137
Mitophagy - animal
cvn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111125920
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
111125920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111125920
04121 Ubiquitin system [BR:
cvn04121
]
111125920
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111125920
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
111125920
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
111125920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
TRAF_BIRC3_bd
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
TRAF2_zf
CEP104_ZnF
zf-C3HC4_2
zf-RING_UBOX
zf-RING_6
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
111125920
NCBI-ProteinID:
XP_022325871
EnsemblRapid:
LOC111125920
UniProt:
A0A8B8DFZ2
LinkDB
All DBs
Position
3:complement(68114574..68126736)
Genome browser
AA seq
536 aa
AA seq
DB search
MASQTECGGYPKAIFIGENFDKKFLCNHCSLILRDPVQSYCGHRFCRSCMESIIRSHEQV
RCQSCIEEGTMDEEYSILKMDQMFPDNAVRREMGXMPAQCINANCTWKGIFKNYDGHMSQ
CKFKPVPCAQCGKLIETQAIDEHMNKDCPKRRIACKHCNSEVIVEDLETHNAECPKIPIK
CDSCGKKKIPRDKMKHHIERECANQKVPCLPDCGEISRDKYIEHLDKRPGIHMKALVDKI
STLQGEITSADSVVQNALGQCISHITEIKQKVQQHTELIQTLQSEQAIMGSGESSSSPVL
QTKVQSLELKTGTFEGIVTTLHREIERCITAIENXERNRQTEKQLIENQEKKIRTLERSI
SLKDVALAEQELRIKTLELTTYDGTLIWKISEWSKRRTEAQNNQVTSLYSPIFYSSKNGY
KMCARLYPNGDGMGKNTHMSIFFVVLPGNFDALLQWPFSYRVTFMLLDQNNKEHQVDSFR
PDPNSSSFKRPTTEMNIASGCPLFIPLSKLDDPSLAYVKEDTMFIKLIVDVPETRK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacaaacagagtgcggaggctatcccaaagcaatatttataggggaaaatttt
gacaaaaaatttctttgtaaccactgtagcttaattttgagggatccagtgcaaagctat
tgtggtcatagattctgtcgctcatgcatggaaagtatcattaggtctcatgaacaagtg
agatgccagtcctgtatcgaagaaggaacaatggatgaagaatacagtattcttaaaatg
gatcagatgtttcctgacaatgcagtgaggagagaaatgggangcatgccagctcagtgt
atcaatgctaactgtacatggaaaggaatctttaagaattatgatggacatatgtcacaa
tgcaaattcaagccagttccttgtgcacaatgtgggaagttgattgaaacccaggctata
gacgaacacatgaataaggactgtcccaagagaaggattgcgtgtaaacactgcaactca
gaagttatagtggaggacttggagacacacaatgcagagtgtcccaaaatcccaatcaag
tgtgactcgtgtggcaagaaaaagatcccaagagacaagatgaaacatcacatagaaagg
gaatgtgcaaaccagaaagtgccgtgtcttccagactgtggtgagatcagcagggataaa
tatattgagcatttggacaagagaccaggtattcacatgaaagccctggtggacaagata
agcacattacagggagaaatcacgtcagcagattctgttgtacaaaatgcccttggtcag
tgtatttcacacatcacggaaatcaagcaaaaggtacagcaacatacagaactgattcag
actcttcaaagtgagcaggctatcatgggttcaggggagagttcaagttcacctgtactc
caaaccaaagtccagtctttggaactcaaaacaggaacttttgaaggcattgtcacaaca
cttcatagagaaattgaacgttgtatcacagctattgagaatngtgagaggaatcggcag
acggaaaaacaactaatagaaaaccaggagaagaaaatacggactctggagagaagcatt
tctctcaaggatgttgcgctggcagaacaggaacttcgaatcaaaacgttggagttgaca
acttacgatgggacacttatttggaagatttccgagtggagcaagcgtcgcacagaagca
cagaacaaccaagtgacaagtctgtactccccaatcttctactccagcaagaacggttac
aagatgtgtgctaggctgtaccctaacggagatggcatgggaaagaacacacacatgtcc
atcttcttcgttgtattgccaggtaattttgatgcgttactacagtggccgttctcctac
cgcgtgaccttcatgctactggaccagaacaacaaagagcaccaggtggactcgttccgc
cccgaccccaacagcagctccttcaagcgccccaccaccgagatgaacattgccagtggc
tgccccctctttattcctctctctaagctggacgacccaagtctggcctatgttaaagag
gacaccatgttcataaaacttatagttgatgtaccagaaactcggaaataa
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