Crassostrea virginica (eastern oyster): 111134586
Help
Entry
111134586 CDS
T09197
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58 isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cvn04054
]
111134586
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111134586
Pattern recognition receptors [BR:
cvn04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
111134586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
DEAD
ResIII
RIG-I_C
Helicase_C
RIG-I_C-RD
CARD
SNF2-rel_dom
AAA_19
Yippee-Mis18
zf-Sec23_Sec24
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111134586
NCBI-ProteinID:
XP_022339453
EnsemblRapid:
LOC111134586
UniProt:
A0A8B8EJ30
LinkDB
All DBs
Position
1:55290877..55309979
Genome browser
AA seq
1062 aa
AA seq
DB search
MAEYSGMEPTSSIDHMASIKCRLDSHEIPTLVQMYRPLIVRCVKADDIVHHLEEVISTRE
REEIIETQNQKGSTSAMDELIETIDGYKYVSKALKGGEVSKDVYQKYRKMLRMNKTTHIF
KLNPDDLLDLLSSEEGIIDQKDVEHIKAEQTKKGQTAATIVLLDRIWRKRENWFTSFLTV
LQNKEYGYIVQEIDPTFFKEWENEQREMKSVSESKQACLTETPVPITRESKPVQCSDAEE
YRFLETAPKNSSKTLSDSHSENSISTDFGFKLDPNELFSKDFDSETEHDLHDSENPPNHI
NNEGTNQKSTLSSENTSAKSVDNHSRNMDGEETNLKMASQITTKENANNTSLGDDEVVLE
TFEERKYQTELARPAIQSQNCIIIAPTGSGKTIVAVKIVKHHLEVNRQGRVKKIAFVVDK
SNLADQQAKVIKRFVACRLKVVSGDSMRDDFTDLSILLSQFDVFVITAQMLINAMKSKQL
SITSFSLVVFDECHHCYGGHPFYKTLIPYHDLKQDEENKHILPQIVGFTASIGIGKAKCK
GDVIEHIRKIMANLDADELVSVKENIEELNDKINSPDQSILKVQNRKVDEFGATIKTLMF
DTEKCLKAAEDQMEDKDGVTPPNTKGNEEYTQWLQNVLREAVAKVTETNLSRSLSTVREY
LEIYNEGLILYSNARALDALRFITEKIGELPRISTTEIEKQANFLFKNAKSHLENSAADG
QRSEENPLLLKLKQILIDTYKEESDMRGIVFVRTRLLAKIIVNWMSETDDLKLIKARKCT
GAGAQNTEGGTTKNKQKETIDLFRKGNYKVIVATTIAEEGIDVKECNLVVRYNYAGNIIS
QIQAKGRGRANNSRFFVLASEENCFAERETTISLKEPMMREAIETIQREILINNEAFQCE
KQTLQRSAKDDRKSVASNQSTKETSQGHCVIRCMKCKEYLCPSSEIRKIGSQYACISDNL
KNKVIFEKGDRTKRIGKDITIGHGKFKCNTCEKILGNVCLYKEIHFPLPNIKSILIDSED
DLKRREFLNKWKTVEELYFTPSLLTEKDLEKIAETGKLVDFN
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtacagcggaatggagccgactagctcgattgatcacatggccagcattaaa
tgccgtcttgattctcatgaaatcccaacattggtccaaatgtataggcctcttattgtc
cgatgtgtcaaagcagatgacattgtccatcatttggaagaagtcatttcgacaagggaa
agagaggaaattatagaaacgcaaaatcagaaaggttccacttcagcgatggatgagctc
atagagacgatagatggttacaaatacgtgtcaaaagctctaaaagggggagaagtatcc
aaagatgtttatcaaaagtacagaaaaatgttgagaatgaacaaaacgacccacattttt
aaactaaacccagatgacctgttagatttgttatcatctgaagaaggtattattgaccag
aaagatgtagaacatataaaggctgaacaaacaaaaaagggacaaacggctgcaacgatt
gttctattggacagaatttggagaaaaagggaaaattggtttacgtctttcctaactgtg
ttgcaaaacaaggaatacggttacattgtacaagaaattgatccaacatttttcaaagaa
tgggaaaatgaacaaagagaaatgaaatctgtatctgaatcaaaacaagcttgtttaaca
gaaacgccagtaccaattacaagagagagtaagcctgttcagtgttcagatgcagaggaa
tatagatttctggagacagctcccaaaaacagctcaaagacattgtcagattctcactct
gaaaactctatttcaacagactttggattcaaacttgatcccaatgagttgttttcgaaa
gattttgattctgaaacggaacatgatttacatgattctgagaaccctccaaaccacata
aataatgagggaactaatcagaaaagcactttaagttcagagaacacttcggcaaaatca
gttgacaaccattctcgaaacatggatggcgaggaaacaaatttgaaaatggctagtcaa
attacaaccaaagagaatgcaaataacacgtctttgggagatgacgaagtggttctggaa
accttcgaagagagaaagtaccaaacagaattagctagacccgcaattcaaagccagaac
tgtataataatagctccaacaggaagcggaaaaacgattgtggctgtaaaaattgtcaag
caccatcttgaagtcaataggcaagggagagtaaaaaaaattgcttttgtggtagataag
agcaacttggccgaccaacaagcaaaagtgataaagcgctttgtcgcctgtagactgaag
gttgtatcaggggactcaatgcgtgatgattttacagacctctccatccttctatcacaa
ttcgacgtctttgtcataacagctcagatgttgataaacgcaatgaagagcaaacagcta
agcatcacttcgttctctctagtcgtatttgatgaatgtcaccactgctatggcggacat
cccttctacaaaacattgatcccctaccatgacctgaaacaagatgaagaaaacaaacac
attctcccgcagattgtcggtttcaccgcctccatcggtatcgggaaagcaaaatgtaaa
ggggacgtcattgagcatatcagaaaaattatggcaaacttagatgcagatgaattggtt
tctgttaaagaaaacatcgaagaactaaacgacaagataaattcacctgatcaatctatc
ctgaaagtgcagaatcgaaaagttgatgaatttggagcaacaattaagaccttaatgttt
gatacggagaaatgtttgaaagcagctgaggatcaaatggaagataaggatggtgtgact
ccacctaatacaaagggaaatgaggaatacactcaatggctacaaaatgttcttcgcgaa
gcggtagctaaagtgactgagacaaacctaagtcgttcactgtccacagtcagagagtat
ttggagatttataacgaaggacttatcttatattctaatgccagagcattggatgcttta
cgatttatcacagaaaagatcggagaacttccgaggatatcaacaacggaaatagagaaa
caagcaaactttctatttaaaaatgcaaaatcacacttggaaaattctgcagcagacgga
caaagaagtgaagaaaaccccctattacttaagctgaaacagatattaatagacacatac
aaagaagaaagcgacatgagaggcatagtttttgttcgtacaaggctactggcgaaaatc
atagtaaattggatgagtgagacggatgacttaaaacttataaaggccaggaaatgcaca
ggagctggagcccagaacacggaagggggaaccacaaaaaacaagcaaaaggaaaccata
gatttattcagaaaaggaaattacaaagtgattgttgccacaacaattgcagaggaaggt
attgatgtcaaagaatgcaacctggttgtgagatataattatgccggaaacattatttca
cagatccaagctaaaggaagaggaagagcaaacaacagtaggttcttcgttttagcatca
gaggaaaattgtttcgctgagagagaaacgacaatttctcttaaagagccaatgatgcga
gaagctatagaaaccattcagagagaaattctgataaacaatgaggcattccagtgtgaa
aagcaaacgttgcaacgttcagctaaagatgatcgaaaatcagtggccagcaaccaaagc
acaaaggagaccagccaaggtcattgcgttattagatgcatgaaatgtaaggagtatctt
tgtccttccagtgaaataagaaaaatcgggtctcagtacgcatgcataagtgataacttg
aaaaataaagttatcttcgaaaagggcgatagaacaaaacgcattggcaaggatatcaca
ataggacatggaaaattcaagtgcaacacatgtgaaaagatcctcggaaatgtctgtctt
tacaaggaaatacattttcctttacccaatatcaaatctattctgattgattcagaagat
gatttaaaaaggagggagtttttgaacaaatggaaaacagtggaagaattgtatttcact
cccagtcttttgaccgagaaggatctagaaaagatcgctgaaacgggtaaactggtggat
tttaactga
DBGET
integrated database retrieval system
