Campylobacter volucris: CVOL_0667
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Entry
CVOL_0667 CDS
T03558
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cvo
Campylobacter volucris
Pathway
cvo03030
DNA replication
cvo03410
Base excision repair
cvo03420
Nucleotide excision repair
cvo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVOL_0667 (ligA)
03410 Base excision repair
CVOL_0667 (ligA)
03420 Nucleotide excision repair
CVOL_0667 (ligA)
03430 Mismatch repair
CVOL_0667 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvo03032
]
CVOL_0667 (ligA)
03400 DNA repair and recombination proteins [BR:
cvo03400
]
CVOL_0667 (ligA)
Enzymes [BR:
cvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CVOL_0667 (ligA)
DNA replication proteins [BR:
cvo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CVOL_0667 (ligA)
DNA repair and recombination proteins [BR:
cvo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CVOL_0667 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVOL_0667 (ligA)
MMR (mismatch excision repair)
DNA ligase
CVOL_0667 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CVOL_0667 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
HAT1_C
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AJC93978
LinkDB
All DBs
Position
638816..640771
Genome browser
AA seq
651 aa
AA seq
DB search
MTYDEYLKKVDLAKEWMRAYYEDDEPLASDEEYDKLIKELKEFEANHQEKISPNSPTQKV
APIIQSEFRKITHESRMWSMEDVFDETELRAWAKRAKCEFDFFIEPKFDGASLNLTYENG
RLISGATRGDGLVGEDITLNVKEISNIPQTIPYKDKIEIRGEVVILKEDFEKINQKRASE
NLSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGFNTLNFSKHSQIMQFIRSLGFLK
DDFVFCCKNLDEVIDKYKQLLNLRDQKPMMMDGMVVRVDDLNHCNMLGYTVKFPKFMAAF
KFPALEKTTTLLGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLDLKIGD
SVNIIRSGDVIPKITKVFTQRRDGLESDIAKPTLCPQCSSELLDEGAFLKCQNLDCKARL
VNSIIYFVSKKCLNIDGLGENIVELLFKEGKITNIESIFFLKYSDFENLEGFKDKKITNL
LNAIENAKNCPLSSFITALGIEHIGEVAAKKLAQSFGFKWYEQNYETYENLEGFGEQMAK
SLQEFTKVNHKRIEHFYEILNLSDEKIDLLHNESISSKTFVITGTLSKPREDFKQLLEKF
GAKVSSSVSKKTDFVLYGEEAGSKLQKAQSLGVKCINEDELNALLKGFDEV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacttatgatgagtatttaaaaaaagtagatttagcaaaagagtggatgagggcatat
tatgaagatgatgaaccattagctagcgatgaagaatacgataagcttattaaagaacta
aaagaatttgaagcaaatcatcaagaaaaaatcagtccaaactcacctactcaaaaagta
gcccccattatacaaagtgaatttcgtaaaatcactcatgagagtagaatgtggtctatg
gaagatgtttttgatgagactgaacttagagcttgggcaaaaagagctaaatgtgagttt
gatttttttatagaacctaaatttgatggagctagtttaaatcttacttatgaaaatggt
agattaattagcggtgctaccagaggagatggcttagtgggagaagacattactttaaat
gtaaaagaaatttctaatatcccacaaactataccctataaagataaaatagaaattcgc
ggtgaagtggtgattttaaaagaagattttgaaaagattaatcaaaaaagagctagtgaa
aatttaagtttatttgctaatccgcgtaacgcagcaagtggttctttaagacaacttgat
actagcattaccaaagaaagaaatttgaaattttatccctggggtgtaggttttaatact
cttaatttttcaaagcattctcaaataatgcaatttataagaagccttggttttttaaaa
gatgattttgtattttgctgtaaaaatttagacgaagtaatagacaaatacaaacaatta
ctaaatttaagagatcaaaaacctatgatgatggatggtatggttgtaagagtggatgat
ttaaatcattgcaatatgcttggctatacggttaaatttccaaaatttatggctgctttt
aaatttcctgctttggaaaaaaccactaccttattaggagtaaatttacaagttggaaga
agtggagtgattactccagtggcggttcttgagcctgtaaatttagatggggttatagtt
aaatcagccactttgcataattttgatgagatagcaagacttgatttaaaaattggagat
agtgttaatattataagaagtggtgatgtgataccaaaaatcacaaaagtatttactcaa
agaagggatggcttagaaagtgatattgccaaaccaactctttgcccacaatgttcaagt
gagcttttagatgagggtgcttttttaaaatgtcaaaatttagactgcaaggcaaggttg
gtaaattctatcatttattttgtttctaaaaaatgtttaaatatcgatggccttggggaa
aatatcgtagaattactatttaaagaaggaaaaatcacaaatatagaaagtatatttttc
ttaaaatatagtgattttgaaaatttagaaggctttaaagataaaaaaatcactaatctt
ttaaatgccatagaaaatgctaaaaattgtcccctatcaagctttattactgccttaggt
atagagcatattggtgaagtagcggctaaaaaattagcacaatcttttggatttaaatgg
tatgagcaaaattatgaaacttatgaaaatttagaaggttttggcgaacaaatggctaaa
agtttgcaagaatttacaaaagtgaatcacaaacgcatcgagcatttttatgaaatttta
aatttaagtgatgaaaaaatcgatcttttacataatgaaagtatttcaagcaaaaccttt
gttatcacaggaactttaagcaagccaagggaagattttaagcaattattagaaaaattt
ggagctaaagtaagttcgagtgtgtctaaaaaaactgattttgtattatatggagaagaa
gctggatcaaagcttcaaaaagctcaaagtttaggtgttaaatgtattaatgaagatgag
ttgaatgctcttttgaaaggctttgatgaggtttga
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