Chlorella variabilis: CHLNCDRAFT_138420
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Entry
CHLNCDRAFT_138420 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cvr
Chlorella variabilis
Pathway
cvr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CHLNCDRAFT_138420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvr03400
]
CHLNCDRAFT_138420
Enzymes [BR:
cvr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CHLNCDRAFT_138420
DNA repair and recombination proteins [BR:
cvr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CHLNCDRAFT_138420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_2
Motif
Other DBs
NCBI-GeneID:
17352170
NCBI-ProteinID:
XP_005844993
JGI:
ChlNC64A_1_138420
UniProt:
E1ZN08
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MLLPPNDLSFQTLVNFFSSCRKLLGNARKGGDVRSQHVKRFIDVNIDKESHQAFAVFRLI
LPAVGAGSAVLLDNKRGNYKLLESNLINVLLKAAGIDKKSKEASTIRNWKRPGSKSAGDF
AAVLQENIFNVYCMIDPTDGTGRLKTLKVGQLNQALDKLVEAAGNFNEQANILRGLMQVT
SPDQMAWIVQIILKNLKINVGEGKVLKTWHKDAETYYNQSGMDLEHIFNEMVATSENYAT
SIQPGKAVRPQLLKMTGSVKWAFSKAMHDEDGKLKEFVVEMKLDGERIQVHRGPRDEISY
FSRRAIEHGEKSNYSVVDDMIRRYTRGPCVLDGELIVWNKKEQVFEPFGSLKPLISAILE
QKHRGDVLDFNEMEEDAAIHDEDYKAPQIGDLELVYVTFDILHNGKGGVIDMPLRERHKM
LEDKVVPGIPADRTHFGSILASRTGRTEEDISQMLQEIVRLREEGIVIKALDSVWVSNDR
HSNNWLKVKPDYIANIELDCLVIGAWGGKGGRGGHYTQYLLALADDPPAGQQVGTGTDRS
EWEAVHRQIEPLCIDASKHPPPCFYSVTGREKPEVWISDPKESVVVQISADLRTIRSTQF
KTGYSLRFPKVHSVRWDKTATIVSSIKDLQGRVEEQKKKDENIDWVKGQDGDTGKKRRTT
KRDKGPAAKRLRGREVVEVESSVLEGCHIAFANYGEHNKRQLEEIVKKLGGETRFMFTEG
SGVTHILAGREDNKVKAHKEHDRDVISIDWLVACDRQKRRVPLRPRYYIHMSRANLIANP
DVDSLGDSYMSDVDEGDVDNLLHRAVRPGAVDPAALAEGLAHPSEFEDSNEEQVAKAQRQ
LTRRLGSADAGRAVGSYLDAQLAAIGQLDPRFSCLRPFSAVLLRLGNGKAIRQPDGDSQR
RLVPSVQSILLAGAASQARLQQLQAAAVAAEFRIMGGALAVALGQSVTHVLGLVLARAPS
VVATDEGSSTGAASAVEPQALLRAVDDQAGGPPAVALLKLGLATGSIQLETDRWVHRCLD
EAENRAAAGQMGTAKLPPEAAFLLDVANLDNPDGHLPQPPKRR
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgccgcccaacgacctgagctttcagacgctggtcaacttcttctcgagctgc
cggaaactcctgggcaatgctcgcaagggaggagatgtccgcagtcagcatgtcaagcgg
ttcatagacgtgaacatcgacaaggaatcccaccaggcttttgcggtattccggctgatt
ctgccggcggtgggtgctggcagcgcggtgctgctggacaacaagcgtggcaactacaag
ctgctggagtccaacctcatcaatgtgctgcttaaggcggcaggcattgacaagaagtcg
aaggaggcctccaccatccgcaactggaagcggccggggtccaagagtgcaggggacttt
gccgctgtcctgcaggaaaacatcttcaatgtgtactgcatgattgaccctaccgatggc
accggcaggctcaagacgctcaaggtgggccagctgaaccaggcactggacaagcttgtg
gaggcggctggcaacttcaatgagcaggccaatatactgagggggctcatgcaggtcacc
tcacccgaccaaatggcctggattgtccaaattatcctcaagaatctcaagatcaacgtt
ggggagggcaaggtgctgaaaacctggcacaaagacgcggagacatactacaatcagagc
ggcatggatttggagcacatcttcaacgagatggttgccaccagcgaaaattatgccact
agcatacagcccggcaaggcggtgcggccccaactgctgaagatgactggcagtgtgaag
tgggcatttagcaaggccatgcacgacgaggatgggaagctgaaggagtttgtggtggag
atgaagctggatggcgagcgcatacaggtgcaccgcggcccccgggacgaaatctcgtac
ttttcgcgtcgggccatcgagcatggcgagaaatccaactacagcgtggtggacgacatg
atccggcgatacacgaggggcccatgcgtactagatggcgagctgattgtgtggaacaag
aaggagcaggtgtttgagcccttcggaagccttaagccactcattagtgccatcctggag
cagaagcaccgtggcgatgtgctcgattttaatgagatggaggaagatgctgccatccat
gatgaagactacaaggcaccgcagataggggacctggagctggtgtatgtcacgtttgac
atactgcacaacggcaagggtggggtgattgacatgccgctgagggagcgtcacaagatg
ctggaagacaaggttgtgccaggaattccagcagacaggacacactttggatccatcctc
gcctctcgcaccggccgcacggaggaggacatttctcagatgctccaggagattgtgcgc
ctgagggaggagggcattgtcatcaaggccctggacagtgtatgggtgtccaatgaccgg
cactcaaacaactggctcaaggtgaagcctgactacatagcaaacatcgagcttgactgc
ttggtgattggggcgtgggggggcaagggagggcgtggcgggcactacacgcagtacctg
ctggccctggcagacgacccaccagctggccagcaggtgggcactggtacggacagaagt
gaatgggaggcggtgcaccggcagattgagccgctgtgcatcgatgccagcaagcacccg
ccgccgtgcttctacagcgtcacgggtcgggagaagcctgaagtgtggatcagcgacccg
aaggagagcgtggtggtccaaatcagtgccgatctgcggactattcgctctacacagttc
aaaacgggctactcgctgcggttcccaaaggtccactctgtcaggtgggacaagacggcc
accattgtcagcagcattaaagatttgcagggaagggtggaggagcagaagaagaaagat
gaaaacatcgactgggtgaagggacaggatggcgacactgggaagaagcgccgcaccacc
aagcgcgacaaggggccggctgccaagcgcctgcggggccgcgaggtggtggaggtggag
agcagcgtgctggagggctgccacattgcctttgccaactatggagaacacaacaagcgg
cagctggaggagatcgtgaagaagttggggggcgagacgcgtttcatgtttacagagggc
tctggtgtcacccacattctggctggccgtgaggataacaaagtcaaggcgcacaaggag
cacgaccgagacgtgatcagcattgactggttggtggcgtgcgatcgccagaagcgccgc
gtgccgctcaggcctcgctactacatccacatgagccgcgccaacctcatcgccaatccg
gatgtggatagccttggcgactcctatatgtcagatgtggacgagggagatgtcgacaac
ctgctgcaccgcgcagtgcgccccggtgctgtggatcctgccgcattggcggaggggctg
gcgcatccctcagagtttgaggacagcaacgaggagcaggtggcaaaggcacagcgccaa
ctgacccggcggctgggaagcgcggatgcgggtcgtgcggtgggttcctacctggacgca
cagctggcggccatcgggcagcttgacccccgcttttcctgcctgcgccccttcagcgcc
gtgctgctgcgcctgggaaatggcaaggccatcaggcaacctgatggtgacagccagcgc
cggcttgtccccagtgtccaatccatcttactggcgggtgccgcgtcgcaagcgcggctg
cagcaactgcaggcagcagctgtggctgcggagttccgcatcatgggcggcgcactggca
gtggcgctggggcaaagcgtgacgcacgtcttggggctggtgttggccagggcgccttcg
gtggtggcaaccgatgaaggcagctcaacaggagcagcatcggcggtggaaccgcaggca
ctgctgcgtgctgtggatgaccaggcgggagggccaccagctgttgccctcttgaagctg
gggctggccacgggcagcatacaactggagaccgacagatgggtgcaccgctgcctggac
gaggcagagaacagagcggcagcggggcagatgggcacggccaagcttccgcctgaagca
gccttcttgctggacgtggccaatctcgacaaccctgatgggcacctgccgcagccaccc
aagcgaagatag
DBGET
integrated database retrieval system
