Corynebacterium vitaeruminis: B843_05975
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Entry
B843_05975 CDS
T03042
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cvt
Corynebacterium vitaeruminis
Pathway
cvt03030
DNA replication
cvt03410
Base excision repair
cvt03420
Nucleotide excision repair
cvt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B843_05975 (ligA)
03410 Base excision repair
B843_05975 (ligA)
03420 Nucleotide excision repair
B843_05975 (ligA)
03430 Mismatch repair
B843_05975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvt03032
]
B843_05975 (ligA)
03400 DNA repair and recombination proteins [BR:
cvt03400
]
B843_05975 (ligA)
Enzymes [BR:
cvt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B843_05975 (ligA)
DNA replication proteins [BR:
cvt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B843_05975 (ligA)
DNA repair and recombination proteins [BR:
cvt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B843_05975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B843_05975 (ligA)
MMR (mismatch excision repair)
DNA ligase
B843_05975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B843_05975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AHI22580
UniProt:
W5Y110
LinkDB
All DBs
Position
1288482..1290665
Genome browser
AA seq
727 aa
AA seq
DB search
MEKVNNVSGEKATAPDFAVVPSEFDSDYEPAPGTKGANGAPEKATVESDELTDLRRQWDD
LAEQVRYHRDAYYNKTPEISDEEFDALFRALQELEREHPELAVPDSPTMEVGAPAAQSSF
DNVEHLERMLSLDNVFSPEELGEWLARTPAETYLTELKIDGLSLDVVYRDGRLDRAATRG
DGRIGEDVTENARVITDLPHELTAHPDFPIPAVLEVRGEVFIAVEDFAAVNEQRQLEGGK
PFANPRNAAAGSLRQKDVEAVRKRRLRMICHGIGFTEGFAPDSQYHAYEALSAWGLPVSQ
YTQKVHSAKEVQERVAHWAQHRHDALHEMDGLVVKVDDLASQRALGSTARAPRWAIAYKY
PPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVFVAGSTVAMATLHNQTEVKRKGVLIGDTV
VIRKAGEVIPEVLGPVVEKRDGTEREFVFPTNCPSCGSVLAPQKEDDADWRCPNTRACPA
QLSARLTYLAGRGAFDIEALGEKAAEDLIASGVLTDEGGLFDLTEDDLLRTNAYTTKKGT
LNAVGKKLLKNLEASKDTDLWRVIVALSIRHVGPTAARALATKFRSLEAARAASVEDLAE
TEGVGQIIAESFKSWFEVDWHQAIIEAWARAGVRMEDDASGQPEQVLEGLTIVVTGTLEN
FSRDSAKEAIITRGGKAAGSVSKKTSFVVVGENAGSKETKARELGIRILNEAEFEQLLAD
GPDGVEA
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaggtcaacaacgtaagcggcgaaaaggccacagccccggacttcgccgtcgtg
cccagcgaattcgacagcgactacgagccagcgccgggcacgaagggcgccaacggcgcg
cccgagaaggcgacggtagaatccgacgagctcaccgacctgcgccgacagtgggacgac
ctggccgagcaggtgcgctaccaccgcgacgcctactacaacaagaccccggagatctcc
gacgaggagttcgacgcgctcttccgcgcgctgcaagagctcgagcgcgaacaccccgag
ctcgccgtgccggacagcccgacgatggaggtcggcgcaccggcggcgcagtcgagcttc
gacaacgtcgagcacctcgagcggatgctgtccctcgacaacgtgtttagccccgaggag
ctgggggagtggctcgcgcgcacgcccgcggagacctacctgacggagctgaagatcgac
gggctctccctcgacgtcgtctaccgcgacgggcggcttgatcgcgccgccacccgcggc
gacgggcgcatcggcgaggacgtgaccgagaacgcccgcgtcatcaccgacctgccgcac
gagctgaccgcgcaccccgacttcccgatccccgcggtgctcgaggtccgcggcgaggtg
ttcatcgcggtcgaggacttcgccgccgtcaacgagcagcgccagctcgagggcggcaag
cccttcgccaacccgcgcaacgcggcggccggatcgctgcggcaaaaggacgtggaggcc
gtgcgcaagcggcgcctgcggatgatctgccacggcatcggctttaccgaggggttcgct
cccgactcccagtaccatgcctacgaggccctttccgcctgggggctgccggtgtcccag
tacacccagaaggtgcactccgcgaaggaggtccaggagcgcgtggcccactgggcgcag
caccgccacgacgccctccacgagatggacgggctcgtggtcaaggtcgacgacctcgcc
tcccagcgcgcgctcggctccaccgcgcgcgccccgcgctgggcgatcgcctacaagtac
ccgccggaggaggtcaccaccaagctgctcgacatccaggtcggcgtgggccgcaccggc
cgcgtgaccccgttcgccgtcatggagccggtgttcgtggcgggctcgacggtggccatg
gccacgctccacaaccagaccgaggtcaagcgcaagggcgtgctcatcggcgacaccgtg
gtcatccgcaaggccggcgaggtgatccccgaggtgctcgggccggtcgtggaaaagcgc
gacggcaccgagcgcgagttcgtcttccccacgaactgcccctcctgcggctccgtgctg
gcgccgcagaaggaggacgacgccgactggcgctgcccgaacacgcgcgcctgcccggcg
cagctgtccgcgcggctgacctacctcgccggacgcggcgccttcgacatcgaggcgctc
ggcgagaaggcggccgaggacctcatcgcctccggcgtgctcaccgacgagggcgggctc
ttcgacctcaccgaggacgatctcctgcgcaccaacgcgtacaccaccaagaagggcacg
ctcaacgcggtgggcaagaagctcctgaagaacctcgaggccagcaaggataccgacctg
tggcgcgtcatcgtggccctgtcgatccgccacgtcggccccaccgccgcccgggcgctg
gcaaccaagttccgctcgctggaggccgcccgcgcggccagcgtcgaggacctcgccgag
accgagggcgtggggcagatcatcgccgagagcttcaagagctggttcgaggtggactgg
caccaggcgatcatcgaggcgtgggcgcgcgccggggtgcgcatggaggacgacgcaagc
gggcagccggaacaggtcctcgaaggacttacgatcgtggtcacgggcacactggagaac
ttcagccgcgactccgccaaggaagcgatcatcactcgcggcggcaaggcggcgggctcg
gtgtcgaagaagaccagcttcgtggtcgtcggcgagaacgcgggctcgaaggagaccaag
gcgcgcgagctggggattcgcatcctcaacgaggcggagttcgagcaattgcttgccgac
gggcctgacggcgtcgaagcctag
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