Campylobacter vulpis: CVULP_1086
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Entry
CVULP_1086 CDS
T08642
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cvu
Campylobacter vulpis
Pathway
cvu03030
DNA replication
cvu03410
Base excision repair
cvu03420
Nucleotide excision repair
cvu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVULP_1086 (ligA)
03410 Base excision repair
CVULP_1086 (ligA)
03420 Nucleotide excision repair
CVULP_1086 (ligA)
03430 Mismatch repair
CVULP_1086 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvu03032
]
CVULP_1086 (ligA)
03400 DNA repair and recombination proteins [BR:
cvu03400
]
CVULP_1086 (ligA)
Enzymes [BR:
cvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CVULP_1086 (ligA)
DNA replication proteins [BR:
cvu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CVULP_1086 (ligA)
DNA repair and recombination proteins [BR:
cvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CVULP_1086 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVULP_1086 (ligA)
MMR (mismatch excision repair)
DNA ligase
CVULP_1086 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CVULP_1086 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QNF78103
LinkDB
All DBs
Position
complement(1075206..1077137)
Genome browser
AA seq
643 aa
AA seq
DB search
MNEYLEKVALANLWMRAYYEKDEPLASDEEYDLLIREIRAFEEKNPSLISKDSPTQKIAP
TIQSQFKKNKHLSKMWSMEDVFDEEELRAWAKRAKCEEGFFIEPKFDGASLNLLYEKGSL
VRAATRGDGEIGEDVSLNVKEIANIPQKIAYEGRIEIRGEVVILKQDFEKLNEKRAKEGL
NLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGEHTLAFTKHSELMHFIRELGFLKDE
FVRLCKDLNEVLLCYKELLALRENKPMMMDGMVVRIDDIALCKELGYTVKYPKFMAAFKF
PALEKSTKLLGVSLQVGRSGVVTPVAILEPVNLDGVVVKSASLHNFDEIERLDIRINDSV
SVIRSGDVIPKITKVFKDRRGENALKIERPKLCPVCESELLDEGALIKCQNLDCKARLVN
SIIYFVSKKCLNIDGLGESIVELLYEKQKITSIESIFHLKFQDFEGLEGFKEKKISKLLN
AIEEAKSCPLYRFITALGIEHIGEVAAKKLALSFDKQWYKKSFEEYKNLEGFGEQMALSL
VEFTKVNAERIEAFYQLLTLQKQEFDTQGIFYEKTFVITGTLSRPREEFKALIERLGGKV
SSSVSKKTHFVLFGEEAGSKLEKAKKLGVRCIDEAEFNALAKI
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaatatttagaaaaagttgcgttggcaaatttatggatgagagcctattatgaa
aaagatgagcctttagcaagtgatgaagaatatgatcttttaataagggaaataagggca
tttgaggagaaaaatccaagtctaatttcaaaagactctcccacgcaaaaaatcgccccc
accatacaaagtcaatttaaaaaaaacaagcatttaagcaaaatgtggtcaatggaagat
gtatttgatgaagaggagcttagagcgtgggcgaaaagggctaagtgtgaggagggcttt
tttatcgagcctaagtttgatggggcaagtttgaatttgctttatgaaaaggggagtttg
gtgcgtgcggcgacaaggggcgatggcgagataggcgaagatgtgagccttaatgtcaag
gagatagcaaatatccctcaaaaaatcgcttatgagggtaggatagaaattcgcggtgag
gtcgtgattttaaagcaggattttgaaaagcttaatgaaaaaagagcaaaagaggggctt
aatctttttgcaaatcctagaaatgcggcaagtgggagtttaagacagcttgatacaagt
attactaaagaaagaaatttgaaattttatccttggggcgtgggagagcatactctagct
tttacaaaacatagtgagcttatgcactttataagagagcttggctttttaaaagatgaa
tttgtaaggctttgtaaggatttaaatgaagttttactttgttataaagaacttttagcc
ttaagagaaaataagcctatgatgatggacggtatggtcgtaagaatcgatgatatagca
ctttgtaaggagcttggctacacggtgaaatatcccaaatttatggcagcttttaaattc
cctgctcttgaaaaaagcacaaaattgctaggcgtgagcttacaagtagggcgtagcggg
gtggtaactcctgtggcgattttagagcctgtgaatttagacggggtcgtggtgaaatca
gcctccttgcataattttgacgagatagaaaggcttgatatacgcattaatgatagtgta
agcgtgatacgaagtggcgatgtaatccctaaaatcactaaggtttttaaggatagaaga
ggtgaaaatgcccttaaaatagaacgccctaaactttgtccagtgtgtgaaagtgagctt
ttagatgagggtgctttgattaagtgtcaaaatttagattgtaaagcgaggcttgtgaat
tccattatttattttgtttctaaaaaatgtcttaatatagacggacttggagaaagcata
gttgagcttttgtatgaaaagcaaaaaatcacttccattgaaagtatctttcatcttaaa
tttcaagactttgaagggcttgagggttttaaagaaaagaaaatttccaagcttttaaat
gccattgaggaggcgaaaagctgtccgctttatcgttttattaccgcacttggcattgaa
cacataggcgaagtggcggcgaaaaaattggctttaagttttgataagcagtggtataaa
aaaagttttgaagagtataaaaatttagagggttttggcgaacaaatggctttaagttta
gtggaatttacaaaggttaatgcagaaagaatagaggctttttatcagcttttaactttg
caaaagcaagagtttgacacgcaaggcatattttatgaaaaaacctttgtcatcacaggc
acgctttcacgccctagagaggagtttaaagcacttatagaaaggcttggaggcaaggta
agctcttctgtgtcaaaaaaaacgcattttgtgctttttggcgaggaggcaggttctaag
ttggagaaggcaaaaaagcttggtgtaagatgcattgatgaggctgaatttaatgctttg
gctaagatatga
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