Citrobacter werkmanii: CO701_05785
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Entry
CO701_05785 CDS
T05129
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cwe
Citrobacter werkmanii
Pathway
cwe03030
DNA replication
cwe03410
Base excision repair
cwe03420
Nucleotide excision repair
cwe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CO701_05785 (ligA)
03410 Base excision repair
CO701_05785 (ligA)
03420 Nucleotide excision repair
CO701_05785 (ligA)
03430 Mismatch repair
CO701_05785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cwe03032
]
CO701_05785 (ligA)
03400 DNA repair and recombination proteins [BR:
cwe03400
]
CO701_05785 (ligA)
Enzymes [BR:
cwe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CO701_05785 (ligA)
DNA replication proteins [BR:
cwe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CO701_05785 (ligA)
DNA repair and recombination proteins [BR:
cwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CO701_05785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CO701_05785 (ligA)
MMR (mismatch excision repair)
DNA ligase
CO701_05785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CO701_05785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ATF48680
LinkDB
All DBs
Position
1175341..1177356
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPDIPDAEYDRLMRELRELEAQHPDLITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVFLPQAG
FEKINEDARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPEEVLAYYHQVEADRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCGSDVERVEG
EVVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTAG
KLTGLDRMGPKSAQNVVNALEKAKQTTFARFLYALGIREVGEATAAGLASYFGTLDALEA
ASIEELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAG
KTVVLTGSLSRMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggacgcaccggacattcccgatgcggaatatgatcgcctgatgcgc
gaactgcgtgaactggaagctcagcacccggatctgattacgcccgactcgccgacgcaa
cgcgtcggtgcggctccgctggcgtccttcagtcagatacgtcatgaagtgccgatgctg
tcgctggacaacgtatttgatgaagagagttttctcgcgttcaataaacgcgtacaggac
cgactgaagagtacggataagctgacctggtgctgtgaactgaagctggacggtctggcg
gtaagcattctgtatgaaaacggcgtgctggtcagcgcggcaacgcgcggtgatggcacg
accggtgaagacattacctcgaatgtgcgtaccattcgcgcgatcccgctcaagctgcgc
ggcgacaatattccaacgcgtctggaagtacgtggcgaagtctttttgccgcaggcgggt
tttgaaaaaatcaatgaagacgcgcgtcgtactggcaataaagtgtttgctaaccctcgt
aacgcggcagccggttcattacgccagctcgatccgcgtatcacggcgaagcgaccgctg
actttcttctgctatggcgtcggcgtgctggaagggggtgaactgccggatacccatttg
gggcgtttgctgcaattcaaagcgtggggacttccggtcagcgacagggtcacgctgtgc
gactctccggaggaagtacttgcttactatcatcaggttgaagcagaccgaccaacgctc
ggcttcgacattgacggcgtggtgattaaggtcaactcgctggcgctgcaggagcaactg
ggctttgtggcccgtgcgccgcgctgggcggtggcgtttaagttcccggcgcaggaacag
atgacctttgtgcgcgacgttgagtttcaggtcggacgtaccggggcgataacccccgtt
gctcgccttgaaccggtacaggtagcaggggtgctggtcagtaacgccacgctgcacaac
gccgatgaaatcgatcgtctgggtttacgcattggtgacaaggtggtgattcgccgcgcg
ggtgatgtgatcccgcaggtggtgaacgtggtgctttccgagcgccccgaagagacgcgt
gaaatcgtcttcccaacccattgcccggtgtgtggttctgacgttgagcgtgtggaaggt
gaagtcgttacccgctgcaccggtggtctcatttgcggtgcacagcgtaaagaatccctc
aagcattttgtttcgcgtcgggcgctggatgtggacggcatgggcgataagattatcgat
caactggtcgagaaagagtatgtccatacgccagccgatctgttccagttaacggccggt
aagttgacggggctggatcgcatggggccgaagtcggcacaaaatgtggtcaatgcgctg
gaaaaagccaaacaaaccacgtttgcccgctttctctatgcgttgggtatccgtgaagtg
ggcgaagccacggccgcaggtctggcaagctatttcggtacgttggatgcgctggaagcg
gcgtccattgaggagctgcaaaaagtccctgacgttggcattgtggtggccactcacgtg
tttaacttctttgccgaagagagcaaccgtgaggtcattggccagctactggcacagggc
attcactggcctgcgccggtggtcatcaacgccgaagagatcgacagcccgtttgccggg
aaaacggtggtactgacgggaagcctgagccggatgtcgcgcgatgacgccaaagcccgg
ttgaccgaactgggggcgaaagtggcgggcagcgtgtcgaagaaaaccgatctggtgatt
gccggtgaagccgcaggctccaagcttgccaaagcacaggagctgggtatcgctgtgatt
gatgaagcggagatgatccgcttactgggcgcctga
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