Corynebacterium wankanglinii: IA203_05595
Help
Entry
IA203_05595 CDS
T08053
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cwk
Corynebacterium wankanglinii
Pathway
cwk03030
DNA replication
cwk03410
Base excision repair
cwk03420
Nucleotide excision repair
cwk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cwk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IA203_05595 (ligA)
03410 Base excision repair
IA203_05595 (ligA)
03420 Nucleotide excision repair
IA203_05595 (ligA)
03430 Mismatch repair
IA203_05595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cwk03032
]
IA203_05595 (ligA)
03400 DNA repair and recombination proteins [BR:
cwk03400
]
IA203_05595 (ligA)
Enzymes [BR:
cwk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IA203_05595 (ligA)
DNA replication proteins [BR:
cwk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IA203_05595 (ligA)
DNA repair and recombination proteins [BR:
cwk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IA203_05595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IA203_05595 (ligA)
MMR (mismatch excision repair)
DNA ligase
IA203_05595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IA203_05595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QNP93400
LinkDB
All DBs
Position
1111379..1113403
Genome browser
AA seq
674 aa
AA seq
DB search
MSEISADLHREWDELAAEVRRHRDLYYNGQPVITDGEFDELFRRLQTLEEEHPELAVPDS
PTKEVGTPATDTAFADVTHPERMMSLDNVFNEDEMREWLAKAPGPYLTELKIDGLSIDLV
YENGELTRAATRGDGTTGEDITANARVIEDIPQKLTGDAPAFLEVRGEVFIRPEDFPELN
ELRQKEGGKPFANPRNTAAGGLRQKNPEDVKKRKLHMICHGIGAREGFAPKSQHEAYEKL
AEWGLPVSEYTRRAETADDVIEAVQYWGEHRNDAIHEMDGLVVKVDSVAEQRQLGATSRA
PRWAIAYKYPPQEVTTKLNDIAVSVGRTGRATPFAVLEPVFVSGSTVSMATLHNQHEVKR
KGVMIGDTVVVRKAGEIIPEVLGPVADLRDGTEREFVYPELCPVCGTKLAPAKEGDADWR
CPNTRSCPAQLSARLEYIASRGVFDIEALGEKGAQDLIASGVLEDEACLFDLTEDDLKKS
SAYTRKDGQVNAAGTKLLANLETARQADLWRVITALSIRHVGPTAARALASRFHSMQALI
DAPTAALAETDGVGDVIAESFKEWFTVDWHKNIVDSWAKAGVTMESAEEDRAPQTLEGLT
IVATGTLEGFSRDEVKEAILSRGGKAAGSVSKKTDYVVVGDNAGSKAAKAEELGRPILNE
EQFVRLLEGGPDAL
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaatttccgctgatctgcaccgcgaatgggacgagctagccgccgaggtgcgc
cgccaccgggacctctactacaacggccaaccggtcatcactgacggagagttcgacgag
ctgttccgccgcctgcaaacgctggaggaggagcacccggagctcgcagtgccggattcg
ccgacgaaggaagtcggcacccccgccaccgacaccgcgttcgccgacgtcacacacccc
gagcgcatgatgagcctggacaacgtcttcaacgaagacgagatgcgcgagtggttggcc
aaagccccggggccgtacctgaccgagttgaagatcgatggtttgtccatcgaccttgtc
tacgaaaacggcgagctgacacgcgccgccacgcgtggcgacggcaccaccggcgaagac
atcaccgccaacgctcgggtgatcgaggacatcccgcaaaagctcaccggcgacgccccg
gcgtttctggaagtccgcggcgaggtgttcatccgccccgaggacttcccggagctcaac
gagctgcgccagaaagagggcggcaaaccgttcgcgaacccgcgcaacactgccgccgga
ggcctgcggcagaagaacccggaggacgtgaagaagcgcaagctgcacatgatctgccac
ggcatcggcgcccgcgagggcttcgccccgaagagccagcacgaagcctacgaaaagctc
gccgagtgggggctgccggtcagcgagtacacgcgccgggcggagactgccgacgatgtc
atcgaggccgtgcagtactggggtgagcaccgaaacgacgctatccacgagatggacggc
ctggtggtcaaggtcgattcggtggctgagcagcgtcagcttggcgccacctcccgagcg
ccgcgctgggcgatcgcgtacaagtacccgcctcaggaggtcaccaccaagctcaacgac
atcgccgtctccgtgggccgcaccggccgcgccacaccctttgctgtgttggagccagtg
ttcgtctccgggtccacggtgtccatggccaccctgcataaccagcacgaagtcaagcga
aagggcgtgatgatcggcgacacagtggtggtgcgtaaggcgggcgagatcatcccagag
gtgctcggccctgttgcggacctgcgcgacggcacggagcgagagttcgtctacccagaa
ctctgcccggtctgcggcaccaagctggcaccggccaaggagggcgacgcggattggcgc
tgcccgaacacccgctcgtgccccgcgcagttgtcggcgcggttggagtacatcgcttcg
cgcggcgtgttcgacatcgaggcgctcggcgagaagggcgcgcaggacttgatcgcatcc
ggcgtgctcgaggacgaggcgtgcctgttcgacctcaccgaggacgacctgaaaaagtct
tccgcttacacgcgcaaggacgggcaggtcaacgccgcgggtacgaagctgctggccaac
cttgaaactgcccggcaagccgatctgtggcgcgtgatcaccgcgctatccatccgccat
gtcggccccaccgcggcccgcgcgctcgcgtcgcgcttccactccatgcaggcgcttatc
gacgcacctacggccgccctcgccgaaaccgacggcgtcggtgacgtgatcgccgagagc
ttcaaagagtggttcaccgtggactggcacaaaaacatcgtggatagctgggccaaagcc
ggcgtgaccatggagtccgccgaggaagaccgggcaccgcagaccctagaggggctaacc
atcgtcgccaccggcacgcttgagggcttcagccgcgacgaggtgaaggaggcgatcctg
tcgcgcggcggcaaagcggccgggtcggtgtcgaagaagaccgactacgtggtggtgggc
gacaacgccggctccaaggccgcgaaggcggaggagttgggccggccgatcctcaacgag
gagcagtttgtgcggctgctcgagggcggccccgacgcgctctga
DBGET
integrated database retrieval system
