Corynebacterium xerosis: FOB82_09975
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Entry
FOB82_09975 CDS
T06491
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cxe
Corynebacterium xerosis
Pathway
cxe03030
DNA replication
cxe03410
Base excision repair
cxe03420
Nucleotide excision repair
cxe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cxe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOB82_09975 (ligA)
03410 Base excision repair
FOB82_09975 (ligA)
03420 Nucleotide excision repair
FOB82_09975 (ligA)
03430 Mismatch repair
FOB82_09975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cxe03032
]
FOB82_09975 (ligA)
03400 DNA repair and recombination proteins [BR:
cxe03400
]
FOB82_09975 (ligA)
Enzymes [BR:
cxe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOB82_09975 (ligA)
DNA replication proteins [BR:
cxe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOB82_09975 (ligA)
DNA repair and recombination proteins [BR:
cxe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOB82_09975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOB82_09975 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOB82_09975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOB82_09975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QGS35931
UniProt:
A0A6B8TTM0
LinkDB
All DBs
Position
2169753..2171903
Genome browser
AA seq
716 aa
AA seq
DB search
MPDTATGGAPADAAPTSPDVRREWEELADEIRDHSAKYYTGQPVISDAEYDELFRRLQDL
EAAHPELAVPDSPTQQVGARVDAPADGVAFEPVEHLQRLYSLDNVFDEAELRDWLARTPA
SAYLTELKIDGLSIDLVYENGRLVRAATRGDGRVGENVTANARTIADIPDELTATDDYPV
PEVLEVRGEVYIPIEEFGKLNAERAAAGQRVFANPRNSAAGSLRQKDPAETAKRPLAMIC
HGIGHVEGWRPASQHDAYLALAAWGLHVSPYTRRVESADDVVKQMLHWGEHRHDAEHEMD
GLVVKVDDLGEQRALGATSRAPRWAIAYKYPPEEVTTELLDIRVSIGRTGRATPYAVMRP
VSVAGSTVEMATLHNPTEVTRKGVLIGDRVTIRKAGDVIPEVLGPVAEVRDGTEREFIYP
TLCPECGTRLAPAKEDDADWRCPNTRYCPGQLRRRVEFLASRGGFDIEHLGERGAADLIH
RGILSDEGDLFALTADDLARSEVYTTAAKNKVGDDGVARGTLNANGKKLLDFIESAKSRE
LWRVLVSLSIRHVGPTAARALAQKFGSMDAIRSASREELADTDGVGGIIADSVIAWFGVD
WHREVVDKWAASGVRMADEVTDRPEQVLEGLTVVVTGSLEDFTRDSAKEAILVRGGKAAG
SVSKKTSVVVVGDNAGSKADKAEQLGVQILDEAGFHRLLSDGPSAIPATVPEDPAG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atccccgacaccgcgaccggcggcgcccccgccgacgccgcccccacctccccggacgtg
cgccgggagtgggaggaactggccgacgagatccgggaccattctgcgaagtactacacc
ggtcagcccgtcatctcggacgcggagtacgacgagctgttccgccgcctccaggacctg
gaggcggcgcacccggagctcgccgtgccggatagcccgacgcagcaggtcggcgcccgc
gtcgacgcgccggccgacggcgtcgccttcgaaccggtggagcacctgcagcgcctgtac
agcctggacaacgtcttcgacgaagcggaactgcgcgactggctggcgcgcaccccggcg
agcgcctacctgaccgagctgaagatcgacggcctgtccatcgacctggtctacgaaaac
ggccgcctcgtccgtgcggcgacccgcggcgacggccgggtgggggagaacgtcaccgcc
aacgcccgcaccatcgccgacatccccgatgagctcaccgcaacggatgactacccggtg
ccggaggtcctggaggtccgcggcgaggtgtacatccccatcgaggagttcgggaagctc
aacgccgagcgcgccgcggccgggcagcgcgtcttcgccaacccccgcaactcggccgcc
gggtcgttgcggcagaaggaccccgccgagaccgccaagcgcccgctggccatgatctgc
cacggaatcgggcacgtcgagggctggcgcccggccagccagcacgacgcctacctggcg
ctggcggcgtgggggctccacgtctcgccgtacacccggcgcgtggaatcggccgacgac
gtcgtcaagcaaatgctgcactggggcgagcaccgccacgacgcggaacacgagatggac
ggcctggttgtcaaggtcgacgacctgggggagcagcgggccctcggcgcgacgtcgcgg
gcgccgcggtgggcgatcgcgtacaagtacccgccggaggaggtcaccacggagctgctc
gacatccgcgtgtccatcggccgcaccggccgggcgacgccgtacgcggtgatgcgcccg
gtctccgtcgccggctcgaccgtggagatggctacgctgcacaacccgacggaggtcacg
cgcaagggcgtgctcatcggcgaccgggtgaccatccgcaaggccggcgacgtcatcccc
gaggtcctcggcccggtcgccgaggtgcgcgacggcaccgagcgcgagttcatctacccg
acgctgtgcccggaatgcggcacgcgcctggcaccggcgaaggaggacgacgccgactgg
cgctgccccaacacccgctactgtccgggccagctgcgtcgccgggtggaattcctggcg
tcgcgcggcggcttcgacatcgagcacctcggcgagcgcggggccgccgatctcatccac
cgcggcatcctgtccgacgagggcgaccttttcgcgctgaccgccgatgatctggcgcgg
tccgaggtgtacaccaccgccgcgaagaacaaggtcggcgacgacggcgtcgcccgcggc
acgctcaacgccaacggcaagaagctgctggacttcatcgagtccgccaaatcgcgcgaa
ctgtggcgcgtgctggtcagcctgtccatccgccacgtcggcccgacggccgcgcgcgcc
ctcgcgcagaagttcgggtccatggacgccatccggtcggcctcccgcgaagagctggcc
gacaccgacggcgtcggcggcatcatcgccgactccgtgatcgcgtggttcggcgtcgac
tggcaccgcgaggtcgtggacaagtgggcggcctccggcgtgcgcatggccgacgaggtc
accgaccgccccgaacaggtcctcgagggcctgaccgtcgtagtgaccggctcgctggag
gacttcacccgcgacagcgccaaggaggcgatcctcgtgcgcggcggcaaggccgcgggc
tcggtgtcgaagaagacctccgtggtcgtcgtcggcgacaacgccggctcgaaggcggac
aaggcggagcagctgggcgtgcagatcctcgacgaggccggtttccaccgcctgctttcc
gacggcccgtccgccatccccgccaccgtccccgaagacccggccgggtag
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