Synechococcus sp. JA-2-3B'a(2-13): CYB_1335
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Entry
CYB_1335 CDS
T00319
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cyb
Synechococcus sp. JA-2-3B'a(2-13)
Pathway
cyb03030
DNA replication
cyb03410
Base excision repair
cyb03420
Nucleotide excision repair
cyb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CYB_1335 (ligA)
03410 Base excision repair
CYB_1335 (ligA)
03420 Nucleotide excision repair
CYB_1335 (ligA)
03430 Mismatch repair
CYB_1335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyb03032
]
CYB_1335 (ligA)
03400 DNA repair and recombination proteins [BR:
cyb03400
]
CYB_1335 (ligA)
Enzymes [BR:
cyb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CYB_1335 (ligA)
DNA replication proteins [BR:
cyb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CYB_1335 (ligA)
DNA repair and recombination proteins [BR:
cyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CYB_1335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYB_1335 (ligA)
MMR (mismatch excision repair)
DNA ligase
CYB_1335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CYB_1335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DNA_pol_lambd_f
HHH
BRCT_2
POLH-Rev1_HhH
RNA_pol_A_CTD
Auto_anti-p27
DUF4332
IMS_HHH_1
Motif
Other DBs
NCBI-ProteinID:
ABD02308
UniProt:
Q2JLU3
LinkDB
All DBs
Position
1397455..1399515
Genome browser
AA seq
686 aa
AA seq
DB search
MDPKLEERARELRTLLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELVTPDSPT
QRVGEKPAEHFPTVFHRIPLYSLENAFNPEELEEWQERLLRVLGRAPVPDSRTEGELEYV
CELKIDGAALALTYIEGLLERGATRGDGQAGEDITPNVRAIRSIPLRLATADPPPVLEVR
GEVYLALAEFERINQERRSAGDPPFANPRNCAAGTLRQLDSRVVAARKLSFFAYALHWPE
GWPAGDPPQTQWQCLQQLKELGFPVNPLSQVCRGLGEVIQFYERWRGAQLPYASDGVVVK
LNSLRLQEEAGFTQKFPRWAIALKYPAQEVPTRIRAIVASVGRTGAVTPVAELEPVPLAG
TLVSRASLHNADRLRELDVHIGDTAIVRKAGEIIPEVVGILKELRPADAVPYSLPSQCPE
CHTPLVRPPGEAVTRCPNPECPAKLRGQLQHWASRDALDIEGLGEKRAAQLVESLGVRTV
ADLYRLTPEQLQGLEGMGSRSSQKLVQAIQRSRQQPWERVLYGLGIPHVGVVTAQILAGH
FPTPELLAQASAETIAQIYGIGAEVAEAVVAWFAEPAHRRLLQELQALGIPALPQQENPA
VSQILAGKKFVITGTLPTLSRQQAKAWIESRGGKVTASVSRQTDYVVVGSDPGSKLEQAQ
QLGIPLLTEAELLALDPTVESGDLHP
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaagttggaagaacgcgcccgcgagctgcgcaccctgctgcagaaggccagc
attgcctactatgtccacgatgctcccatcctggaagacagcgtttacgaccgcctctac
cgcgagctgcaagagctggagcgggcttaccctgaactggtcacccccgatagccctact
cagcgggtgggagaaaaacctgcagagcattttcccaccgtcttccaccgcatccccctc
tacagcttggaaaacgctttcaacccagaagagctagaggagtggcaagagcgtctgctg
cgagttttgggccgtgcccctgttcccgacagcaggacagagggagagctggaatatgta
tgtgagctgaagattgatggcgccgccttggccctaacctacatcgagggtcttttggag
cggggtgctactcggggggacggacaggccggagaggacatcacccccaacgtgcgcgcc
attcgttcgattcccctgcggctggcgacagcagatccgcctcccgttttggaggtgcgg
ggggaagtctatctggccctagccgagtttgaacggatcaaccaagagcgtcgttccgct
ggggatcccccctttgccaacccgcgcaactgtgctgccggtaccctgcggcagttggat
agccgcgttgtggccgcccgcaagctcagcttcttcgcctacgccctccactggccggag
ggatggcctgccggggatcccccgcaaacccagtggcagtgtctgcagcagctcaaggaa
ttgggatttccggtcaaccccctttcccaggtctgtcggggcttgggagaagtgatccaa
ttttatgagcgatggcggggtgcccagctcccctacgccagcgacggggtggtggtgaaa
ttgaactccttgcggctgcaggaggaggccggctttacgcaaaaatttccccgctgggcc
attgccctcaaatacccagctcaagaggttcccactcgcatccgcgccatcgtggccagc
gtgggccgtaccggcgccgtcactccagtggcagagctggagccggttcctctggccggc
acccttgtcagccgcgccagcctgcacaatgccgatcgcctgcgggagctggacgtgcac
atcggcgatactgccatcgtgcgcaaagccggggagatcatcccggaggtggtcgggatc
ctgaaggaattgcgccctgccgatgccgttccctacagcctgcccagccagtgccccgaa
tgccacacccccttggttcgtccccccggcgaagccgtgacccgctgccccaaccccgag
tgcccggccaagctgcggggccaattgcagcactgggccagccgcgatgctttggatatc
gaaggcttaggggaaaagcgggcagcccaattggtggagagcttgggggtgcgcaccgta
gccgatctctaccgcctcaccccagagcagttgcagggtttggagggaatgggatcccgc
tccagccaaaagctggtgcaagccattcagcgctctcgtcaacagccctgggaacgagtg
ctctacgggctggggatcccccatgtgggggtggtcactgcccagattttggccggccat
tttcccacccctgagcttttggcccaggccagtgcagaaaccatcgcccagatctatggg
ataggcgcggaagtggcggaagcggtggtggcctggtttgccgagccggcccatcgtcgc
ctgttgcaggagttgcaggcgctagggatccccgctcttcctcagcaggagaaccctgcc
gtctcccagatcctggccgggaaaaaattcgtaatcaccggcaccttgcccaccctctcc
cgccagcaggccaaggcttggattgagagtcgggggggcaaagtcaccgccagcgtcagc
cgccaaaccgactacgtggtggtgggctctgaccccggctccaagctggagcaagcccaa
caactggggatccccctgctgaccgaagcggagctgttggcgctggatcccaccgtggaa
tccggtgatctgcatccttga
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