Gloeothece citriformis: PCC7424_2883
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Entry
PCC7424_2883 CDS
T00808
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cyc
Gloeothece citriformis
Pathway
cyc03030
DNA replication
cyc03410
Base excision repair
cyc03420
Nucleotide excision repair
cyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCC7424_2883
03410 Base excision repair
PCC7424_2883
03420 Nucleotide excision repair
PCC7424_2883
03430 Mismatch repair
PCC7424_2883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyc03032
]
PCC7424_2883
03400 DNA repair and recombination proteins [BR:
cyc03400
]
PCC7424_2883
Enzymes [BR:
cyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PCC7424_2883
DNA replication proteins [BR:
cyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PCC7424_2883
DNA repair and recombination proteins [BR:
cyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PCC7424_2883
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCC7424_2883
MMR (mismatch excision repair)
DNA ligase
PCC7424_2883
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PCC7424_2883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Recep_L_domain
HHH
RNA_ligase
DUF7898
Motif
Other DBs
NCBI-ProteinID:
ACK71288
UniProt:
B7K8U0
LinkDB
All DBs
Position
complement(3207660..3209696)
Genome browser
AA seq
678 aa
AA seq
DB search
MPSATPEIKQRVDQLRSQLQKASYAYYVLDNPIMEDVVYDQLYRELQNIETQYPELITPD
SPTQRVGDKLSEQFISVNHNIPLYSLENAFNLQEFARWQERWQRLTPDVTQFEYVCELKI
DGSAIALTYENGLLVRGVTRGDGIVGEEITPNIKTIRSIPLKLALDNPPVRIEVRGEAFL
PIEEFERINQEKQTAGESLFANPRNAAAGTLRQLDPRIVDRRRLQFFAYTLYVIDSPSTP
TTQWESLEDLQQMGFLVNPNRKLCQSEAEVDQYYQLWDTERHNLPYMTDGVVVKLNDYQL
QQQLGFTQKFPRWAIALKYPAEEAPTQVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQKA
TLHNSDRVAQLDIRVGDTVIIRKAGEIIPEVVRVIEELRPPNTQPYQMPTQCPECHSTLV
RPKGEAVTRCVNSSCPAILRGSLVHWCSRDALDIRGLGEKVVILLIDNGLVHSIADLYHL
KVEQIASLERMGTKSANNLINAINKSKQQPWSRVLYGLGIRYVGSVTAKLLSDNFKSVEQ
LSQASFTSLESVYGIGAEIAQSVYDWFKIEANQTLIKNLQQAELQFETLSETPKYPPISS
TPLAGKTVVITGTLPSLKRNEAQELIEKAGGKVTNSVSSKTDYLLVGEDAGSKLTKAQQL
GISQLSEEQLLKMINPQE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgccatcagcaacccccgaaatcaaacagcgagtcgaccaactgcgatcgcaactccaa
aaagccagttatgcttactacgtccttgataatccaattatggaggatgttgtctacgat
caactgtaccgagaactgcaaaatatagaaacccaataccccgaattaattactcccgat
agtccaactcaacgggtaggcgataaactctcagagcaatttatctcggtaaaccataat
attcccctttatagtttagaaaatgcctttaatttacaagaattcgcccggtggcaagaa
agatggcagcgccttacaccggatgttacccaatttgaatatgtttgtgaattaaaaatt
gatggatcggcgatcgctttaacctatgaaaatgggttattagttcggggtgtcaccaga
ggagatggaatagtcggagaagaaattacccctaatattaaaacaattcgctctattcct
ttaaaattagctttagataatccgccggttcggatagaagttcgaggagaagcgttttta
ccgatcgaagaatttgagagaattaatcaagaaaaacaaaccgccggggaatctttattt
gctaacccccgcaatgccgccgccggaaccttacgtcaactcgatccgagaattgtcgat
cgtcgtcgcttacaattttttgcctatactttatatgtgattgattccccatcaaccccg
acaactcaatgggaatctttagaagatttacaacaaatgggatttttagtcaatcctaac
cgaaaactctgtcaatcagaagccgaagtcgaccaatattatcaactttgggacaccgaa
agacataatttaccttacatgaccgatggagtagtggtcaaactcaatgactatcaactt
caacaacaattagggtttacccaaaaattcccccgatgggcgatcgccctgaaatatccc
gccgaagaagcacccacccaagttaaaaatattaccgtcaatgtgggacgaactggcgcc
gttaccccgatggccatcatggaaccggtacaactggccggtacaactgtacaaaaagcg
actttacataatagcgatcgggtggctcaattagatattagagtaggagatacggtaatt
atccgcaaagccggagaaattattcccgaagtcgtccgggtgatcgaggaattacggcct
cctaatactcaaccttatcaaatgccgacccagtgtccagaatgtcactcaaccttagtc
cgtcccaaaggagaggcggtgactcgttgtgtcaatagttcttgtccggccattttgcgg
gggagtttagtccattggtgttcacgggatgccttagatatacgagggttaggggaaaaa
gtggtgatcctattaattgacaatgggttagtccattctattgcggatttatatcactta
aaagtagaacaaattgcctctctagaacggatggggacaaaaagcgccaataatttaatc
aatgctattaataaaagtaaacagcaaccttggtcacgggtattatatgggttaggaatt
cgctatgtggggagtgttaccgctaaactcttaagtgataattttaaaagtgtagagcaa
ttatctcaagcttcttttacctctttagaatccgtttatggcatcggggcagaaatcgct
caatcggtttatgattggtttaaaatagaggccaatcaaactttaattaaaaacttacaa
caagccgaattacagtttgaaaccctatctgaaaccccaaaatatcctccaatttcctca
actcccttggccggtaaaacggttgttattaccggaacgttacccagtttaaaacgaaat
gaagcccaagagttgatcgaaaaagccggcggaaaagttactaactcagtcagttctaaa
accgattatctcttagtaggagaagatgccggatcgaaattaaccaaagctcaacagtta
ggcatttctcaattgagtgaagaacaactcttaaaaatgattaacccgcaagaataa
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