Cyanobacterium sp. DS4: Dongsha4_06935
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Entry
Dongsha4_06935 CDS
T11028
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cyd Cyanobacterium sp. DS4
Pathway
cyd03030
DNA replication
cyd03410
Base excision repair
cyd03420
Nucleotide excision repair
cyd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dongsha4_06935 (ligA)
03410 Base excision repair
Dongsha4_06935 (ligA)
03420 Nucleotide excision repair
Dongsha4_06935 (ligA)
03430 Mismatch repair
Dongsha4_06935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyd03032
]
Dongsha4_06935 (ligA)
03400 DNA repair and recombination proteins [BR:
cyd03400
]
Dongsha4_06935 (ligA)
Enzymes [BR:
cyd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dongsha4_06935 (ligA)
DNA replication proteins [BR:
cyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dongsha4_06935 (ligA)
DNA repair and recombination proteins [BR:
cyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dongsha4_06935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dongsha4_06935 (ligA)
MMR (mismatch excision repair)
DNA ligase
Dongsha4_06935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dongsha4_06935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_lig_T4_1
Hydrolase_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WVL01915
LinkDB
All DBs
Position
1632316..1634331
Genome browser
AA seq
671 aa
AA seq
DB search
MNNIPTEIITRITDLKKQLQKASYAYYVLDNPIMEDSVYDQLYRELLNLENQYPSLITPD
SPTQRVGDKLSNQFSSIPHNIPLYSLDNAFNFAELKEWENRWQRQLNNVPEFAYVCELKI
DGSAIALTYENGILVKGLTRGDGVTGEDITNNLRTIRSIPLRLQIDNPPEVLEVRGEAFL
PLDEFTRINEEREKLGENLFANPRNATAGTLRQLDPNIVSARKLQFFAYNAHILPENNNL
NTQDQVLKYLTEIGFLVNPNYQVFNNLQTVKEYLDYWEKNRHNLPYMTDGVVIKINSFSL
QNQLGFTQKFPRWAIALKYPAEEVPTVVERIIVNVGRTGAVTPMAIMKPVQLAGTTVQRA
TLHNGDRVRELDIRVGDTVTIRKAGEIIPEVIEVLTELRPENTQPFQMPTHCPECNSPLV
KPEAEAILRCVNTSCPAILRGNLIHWASRDAMDIRGLGEKIIISLMEYRLVNSIVDLYKL
TPFQLVDLDRMGEKLAQKLIQAIQESKKQPFARVLYGLGIRYVGQVNAKILAENFENVDN
LAKATQEELESVYGIGEEIANAVFLWFKVPENQQLISELQTLNFSLAIDTKNKQTNQQLL
NKTFVLTGTLPTLKREEAKQIIESSGGKVTGSISKKTDFVVVGEKAGSKLEKAQKLGIKT
ITEEELLALVK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatattcctacagaaattattactagaataacagatttaaaaaagcaattacaa
aaggctagttatgcttattatgtattagataatcccatcatggaagactctgtttatgat
caattatacagagaattattgaacctagaaaatcaatatcctagtttaataactcctgat
agtcctactcaaagagttggagataagttaagcaatcaattcagttcaattccccataat
attcctctttatagtcttgataatgcttttaattttgcagaactaaaagagtgggaaaat
cgttggcaaaggcaattaaataatgttccagaatttgcctacgtttgcgaattaaaaata
gatggatctgccatagctttaacctatgaaaatggtattttagtaaaaggtttgacaaga
ggagatggagttacaggagaagatataaccaataatttacgaactattcgctctattcct
ttacgcctacaaatagataatcctcccgaagttttagaggtgagaggagaggctttttta
cctttagatgaatttaccagaattaatgaggaacgagagaaattaggagaaaatttattt
gctaatcctcgtaatgctacagcaggaacattgagacaattagatcccaatattgttagt
gccagaaaattacaatttttcgcttataatgctcatattctacctgaaaataataacctc
aatactcaagatcaagtattaaaatacttaacagaaattggctttttagttaatcctaat
tatcaagtttttaataacctacaaactgtaaaagaataccttgattattgggaaaaaaat
cgtcacaatttaccatatatgacggatggagttgtcattaaaataaactctttttcttta
caaaatcaactaggttttactcaaaaatttcctcgatgggcgatcgcacttaagtatcct
gccgaagaagtgccaacagtggtagaaagaataatcgttaacgtcggacgcacgggggca
gtaactcccatggcaataatgaaacctgtacagttagctggtacaacagttcaaagagct
actttacataatggcgatcgagtgcgagaattagatattagagtgggggataccgtgact
attcgcaaagcgggagagattatccctgaagtaatagaggttttaaccgaattaagacca
gaaaatactcaacccttccaaatgcctactcattgccctgagtgtaattcacccctcgtc
aaacctgaagccgaagcgatacttcgttgtgttaatacttcttgccctgctattcttcga
ggtaatctgattcattgggcttccagagatgccatggacatcagaggtttaggggaaaaa
attattatctctttaatggaatatcgattagtaaattcgatcgtagatttatataaatta
actccatttcaattggttgacttagatagaatgggggaaaaattagcacaaaaactaata
caagctattcaagagagtaaaaaacaaccttttgctagagttttatatggtttaggaatc
cgttatgtagggcaagtaaatgcaaaaatcttggcagaaaattttgaaaacgttgataat
ttagccaaggcaactcaagaagaattagaatctgtttacggtattggtgaagaaatagca
aatgcagtatttttatggtttaaagtaccagaaaatcaacaattaattagtgaattacaa
actctcaattttagtttagccatagatacaaaaaacaaacaaactaatcagcaattattg
aataaaacctttgttttaactggaacattacccaccctaaaaagagaagaagcaaagcaa
attattgagtcatcaggtggaaaagttactggcagtattagtaaaaaaactgactttgta
gtagtgggagaaaaagcaggttctaaattagaaaaagctcaaaaattagggataaaaacc
ataacagaggaggagttattagctttagttaaataa
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