Cyanobium sp. NIES-981: CBM981_2142
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Entry
CBM981_2142 CDS
T04888
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cyi
Cyanobium sp. NIES-981
Pathway
cyi03030
DNA replication
cyi03410
Base excision repair
cyi03420
Nucleotide excision repair
cyi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBM981_2142 (ligA)
03410 Base excision repair
CBM981_2142 (ligA)
03420 Nucleotide excision repair
CBM981_2142 (ligA)
03430 Mismatch repair
CBM981_2142 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyi03032
]
CBM981_2142 (ligA)
03400 DNA repair and recombination proteins [BR:
cyi03400
]
CBM981_2142 (ligA)
Enzymes [BR:
cyi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBM981_2142 (ligA)
DNA replication proteins [BR:
cyi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBM981_2142 (ligA)
DNA repair and recombination proteins [BR:
cyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBM981_2142 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBM981_2142 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBM981_2142 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBM981_2142 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
zf-tcix
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
SBO43841
UniProt:
A0A182AS97
LinkDB
All DBs
Position
I:1931828..1933951
Genome browser
AA seq
707 aa
AA seq
DB search
MAGAPEPIAARVAELSRLLTHAAHAYYVLDAPVMEDPVYDRLYRELLELEQAYPELIRPD
SPTQRVGGSPAEGFRSVEHRIGLLSLDNAFSTEELEAWYARLLKVLDRTPAAGEPLPALP
MVGELKIDGNALALSYRDGLLERAATRGDGERGEEITANVRTIQSVPLRLQLGHPPAWVE
VRGEALIPDGTFAAINAERQGRGEPAFANPRNACAGTLRQLDPQVVADRRLDFFAYTLHL
PDDWQPGPDDPPRPASQWESLAWLRAAGFKVNPNAELLDDLAAVEAFFARWEPDRRQLPY
ATDGVVVKLDDLRLQADAGFTQKAPRWAIALKYAAEEAPSRLLRLSCQVGRTGVVTPVAE
FEPVPLAGTSVSRATLHNADRLAELNLHAGDTIVVRKAGEIIPEVVRVLPELRPAGALPL
QLPPTCPECGSELVREAGEAATRCVNSSCPAILRGALRHWVSKGALDVDGAGSKLIEQLV
DRGLVRSIADLYRLDAALLASLERMGEKSAANLVAALAASKGQPWHRQLYGLGIHHVGEV
NAKALARAFPGAAELAAAAAEAPERITAVFGIGDEIAQSLQQWFATAANQGLLRQLEREG
FSLAAGAAERAAGQGAGGAGDSGDAAPLAGRTFVLTGTLPSLSRRQAQDLIEAAGGKVTA
SVSKKTSYVVAGAEAGSKLTKAESLGVPVLDEEGLLALLEQGKPASA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggagcccctgagcccatcgcggcgcgcgtggctgaactgagccggctgctcacc
cacgccgcccacgcctactacgtgctggatgctccggtgatggaggatccggtctacgac
cggctctaccgggaactgctggagctcgagcaggcctaccccgagctgatccggcccgac
agtcccacccagcgggtggggggcagcccggccgagggcttccgcagcgtggagcaccgc
atcgggctgctcagcctcgacaacgccttctccaccgaggagctggaggcctggtacgcc
cggctgctgaaggtgctcgaccgcacccccgccgccggcgaaccgttgccggcgctgccg
atggtgggggagctcaagatcgacggcaacgccctggccctcagctaccgggacggcctg
ctggaacgggccgccacccgcggcgacggcgaacggggcgaggagatcaccgccaacgtg
cgcacgatccagagcgtgccgctgcggctgcaactgggccaccctcccgcctgggtggag
gtgcgcggcgaggccctgattcccgatggcacctttgccgccatcaatgccgagcgccag
ggccgcggcgagccggccttcgccaacccgcgcaatgcctgcgccggcaccctgcgccag
ctcgatccccaggtggtggcggatcgccggctggatttcttcgcctacaccctgcacctg
ccggacgactggcagcccggaccggacgatccgccccggccggccagccaatgggaaagc
ctggcctggctgcgggccgcgggcttcaaggtgaatcccaacgccgagctgctggacgat
ctggccgcggtggaggccttcttcgcccgctgggagccggaccgccgccagctcccctat
gccaccgacggcgtggtggtgaagctcgacgatctgcgcctgcaggccgacgccggcttc
acccagaaggcgccccgctgggccatcgccctcaagtacgccgccgaggaggcccccagc
cgcctgctgcggctgagctgccaggtgggccgcaccggcgtggtgaccccggtggcggaa
ttcgaaccggtgcccctggccggcaccagcgtgagccgggccaccctgcacaacgccgac
cggctcgcggagctgaatctgcacgccggcgacacgatcgtggtgcgcaaggccggcgag
atcatcccggaggtggtgcgggtgctgccggagctgcggcctgccggggccctgccgctg
cagctgccccccacctgcccggagtgcggctcggagctggtgcgggaggccggcgaggcg
gccacccgctgtgtgaacagcagctgcccggcgatcctgcgcggcgccctgcgccactgg
gtgagcaagggggccctggatgtggacggcgccggcagcaagctgatcgagcagctggtg
gaccggggcctggtgcgctcgatcgccgacctctaccggctcgatgccgccctgctggcc
agcctggagcggatgggggagaagtcggcggccaacctggtggcggccctggccgcctcg
aaggggcaaccgtggcaccgccagctctacggcctcggcatccaccacgtgggcgaggtg
aacgccaaagccctcgccagggcgtttccaggcgcggcggagctggcggcggcggccgcc
gaggcgcccgagcggatcaccgcggtgttcggcatcggcgacgagatcgcccagagcctg
cagcagtggtttgccaccgcggccaaccagggcctgctgcggcagctggagcgggaaggc
ttctccctggccgcgggcgcggcggagcgggctgccggccagggcgccggtggagccggc
gattccggcgacgccgcccctctggcgggccgcaccttcgtgctcacgggcacgctgccc
agcctcagccgtcgccaggcccaggacctgatcgaggccgccggtggcaaggtcaccgct
tcggtgagcaagaagaccagctatgtggtggccggcgccgaggccggcagcaagctcacc
aaggccgagagcctgggggtgccggtgctggatgaagagggtctgctggctctgctggag
caggggaagccggcctcggcatga
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