Cyanobacterium sp. IPPAS B-1200: A5482_004995
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Entry
A5482_004995 CDS
T10868
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cyr Cyanobacterium sp. IPPAS B-1200
Pathway
cyr03030
DNA replication
cyr03410
Base excision repair
cyr03420
Nucleotide excision repair
cyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A5482_004995 (ligA)
03410 Base excision repair
A5482_004995 (ligA)
03420 Nucleotide excision repair
A5482_004995 (ligA)
03430 Mismatch repair
A5482_004995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyr03032
]
A5482_004995 (ligA)
03400 DNA repair and recombination proteins [BR:
cyr03400
]
A5482_004995 (ligA)
Enzymes [BR:
cyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A5482_004995 (ligA)
DNA replication proteins [BR:
cyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A5482_004995 (ligA)
DNA repair and recombination proteins [BR:
cyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A5482_004995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A5482_004995 (ligA)
MMR (mismatch excision repair)
DNA ligase
A5482_004995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A5482_004995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
HHH_8
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
XPM70179
LinkDB
All DBs
Position
1084878..1086896
Genome browser
AA seq
672 aa
AA seq
DB search
MASIPTEISNRVQQLKVKLQEASYAYYVLDNPIMEDSVYDQLYRELQTLEIDYPQLITID
SPTQRIGDKLDGQFNSVKHNIPLYSLDNAFNFEELKQWENRWQKQLSKTVDFDYICELKI
DGSAIALTYENGILTRGLTRGDGITGEDITHNLRTIRSIPLKLNLDNPPPILEVRGEALL
PLKEFERINQQRAKNQENLFANPRNATAGTLRQLDPNIVSQRKLQFFAYNLHINSENISI
NSQKESLDFLQQNGFLVNPNHQICKSLEDVINYCNYWENNRQQLPYMTDGIVIKINSLTL
QSQLGFTQKFPRWAIALKYPADETPTIVEKITVNVGRTGAVTPMAIMKPVLLAGTTVQRA
TLHNYDFLQQLDIRVGDTVVIRKAGEIIPEVVRVIPELRPENTQPFEFPTHCPECGSELV
RPENEAVTRCVNNSCPAILRGSLIHWASRGAMDIRGLGEKVVALLMEHKLIKSIADIYEL
KAFEIAELERMGEKSAQNLITAIEGSKKQPFAKVLYGLGIRYVGAVNAQILADNFQDIDS
LANASIMDLEAINGIGKEIANSVVEWFSIEQNKQLINLLKSHSLTLQNDNTQKDDQQLIL
EGKIFVVTGTLNQLTRNEAKDLIQKYGGKVTGSVSSKTDYLLAGEKAGSKLTKAQELGIK
IISESELLTMIN
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcttctattcccactgaaattagtaatcgagttcaacagttaaaagttaaattgcaa
gaggcaagttatgcttattatgtgttggataatcctattatggaagattcagtttatgat
caactttatcgggaattacaaaccctagaaatagattatccccaattaattactatagat
agtcccactcaaagaataggagataaattagatggtcagtttaattctgttaagcataat
attcctctttatagtttggataatgcttttaacttcgaggagttaaaacagtgggaaaat
agatggcaaaaacagttatctaaaaccgttgattttgattatatttgtgagctaaaaata
gatggcagtgcgatcgcccttacctacgagaatggaatattaacaaggggtttaacaagg
ggtgacggtattacgggggaagacattacccataatttgcgcaccattcgctctattccc
ctcaagctaaatttagataatccaccccccatattagaagtaaggggagaagccctatta
cccctcaaagaatttgaaagaattaatcaacaaagggcaaaaaaccaagaaaatttattt
gctaatcctcgcaacgccaccgcaggaacattaaggcaattagaccctaatattgttagt
caaagaaaactacaattttttgcctataacttacacataaatagcgaaaatatttctatt
aatagtcaaaaagagtcgctagattttttacaacaaaatggctttttagtcaatcctaac
catcaaatttgtaaatccttagaagacgtaattaattattgtaattactgggaaaataat
cgccaacaattaccctacatgaccgatggtattgttatcaaaataaactccctaaccctt
caaagtcaactcggttttactcaaaaattcccccgatgggcgatcgcccttaaataccct
gccgatgaaacccccaccatcgtcgaaaaaatcaccgtcaacgtaggacgtactggggca
gtgactcccatggcaatcatgaaacccgtgctattggcaggaacaaccgttcaaagagcc
actttacataactacgactttttgcaacaattagacattagagtgggagataccgtagta
attcgcaaagcaggggaaataatccccgaagtcgtcagagttatccccgaattacgcccc
gaaaatactcaacccttcgagtttcccacccattgccccgaatgtggctcagaattagta
cggcccgaaaacgaagccgttacccgttgtgtaaataattcctgccctgccattttgcgg
ggtagcctaatccattgggcatcccgtggcgccatggatattagggggctaggagaaaaa
gtagtggctttgttaatggaacataaattaattaaatccattgctgatatatacgaatta
aaagcctttgaaattgccgaattagaacgcatgggggaaaagtcggctcaaaacttaatt
actgccattgaagggagcaaaaaacaaccttttgccaaagttttatacggtttaggaatt
cgttatgtgggagcagtaaatgctcaaattttagcggataattttcaagatatagacagt
ttagccaatgccagtattatggatttggaagcaatcaatggcataggaaaagaaattgct
aattccgtggtggaatggtttagtattgagcaaaataaacaactaattaatcttttaaaa
agtcatagtcttaccttacaaaatgataatactcaaaaagatgaccaacaattaatacta
gaaggcaaaatctttgtagttacaggaacattaaatcaattaaccagaaatgaagctaaa
gatttaattcaaaaatatggaggaaaagtaacaggctcggtaagtagtaaaacagactat
ttattggcaggagaaaaagcaggttcaaagttaactaaagctcaagaattaggcattaaa
attatttctgaatcagaattattaaccatgattaattaa
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