Candidatus Atelocyanobacterium thalassa: UCYN_09010
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Entry
UCYN_09010 CDS
T01159
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03030
DNA replication
cyu03410
Base excision repair
cyu03420
Nucleotide excision repair
cyu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UCYN_09010
03410 Base excision repair
UCYN_09010
03420 Nucleotide excision repair
UCYN_09010
03430 Mismatch repair
UCYN_09010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyu03032
]
UCYN_09010
03400 DNA repair and recombination proteins [BR:
cyu03400
]
UCYN_09010
Enzymes [BR:
cyu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UCYN_09010
DNA replication proteins [BR:
cyu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UCYN_09010
DNA repair and recombination proteins [BR:
cyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UCYN_09010
NER (nucleotide excision repair)
GGR (global genome repair) factors
UCYN_09010
MMR (mismatch excision repair)
DNA ligase
UCYN_09010
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UCYN_09010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
zf-C4pol
Mut7-C
Motif
Other DBs
NCBI-ProteinID:
ADB95585
UniProt:
D3EQ35
LinkDB
All DBs
Position
complement(1031936..1033984)
Genome browser
AA seq
682 aa
AA seq
DB search
MNNLNIQKTIIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLISSDSV
TQRVGEKPALHFNSVKHDIPLYSLENAFNLQELEAWENRNQKYLKSQENQLIKYIAELKI
DGSALSLTYENGLLTRGLTRGDGIVGEDITQNIRTIFSIPLHLNLDDPPSIMHVNGEAFL
PLDEFKRINKQKQKEGKSLFANPRNAAAGTLRQLDSKIVSERKLQFFAYSLYADNLDIKS
QWDTLKFLQECGFLVNPYYRLCKSLDTVTNYFNEWKSAKKHLPYMTDGVVIKINSHILQK
ELAYTQRFPRWAIALKYPAEEISTVVEDIIFNTGRTGAVTPMAVMNPVLLGGTIVRKATL
HNIDRIAQLGICIGDTVTIRKAGEIIPEVIRVLKTLRHHKTKVFQISERCPKCNSMLVSF
SNEAVVRCINNSCPAILKGNLIHWSSRDAVDISGLGEKIIDLLISNGLVNSISDLYHLNF
QEVSNLERMGIKSAENLIKSIESSKTKSWTKVLYGLGIHHVGYTTAILLTENFSSVQQLL
QAPYDTLVTIKGIGKEVAYSIRSWFSLEENQKLISELDKNGFVLENKNLGINQNKPDKQI
FFNITFVITGSLNTLKRSEIKNLIENFGGKVVNSVTKKTNYILVGENPGSKLAEGMKLNI
IRLNETDFLRILKDANIEINEI
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgaataatttaaatattcagaaaacaatcataaaacttcgtaaacatcttcagcaagct
aattatgcttatcatgttttaaatgagtccataatggaagactcagtgtatgatcagctg
taccgacagttatacaatttagaacaaagaaatccaaatctcatcagctctgacagtgtt
acacaaagagtaggagaaaaacctgcccttcattttaattctgttaaacatgatattcct
ctatatagtttagaaaatgcctttaatttacaagaattagaagcttgggaaaatcgtaat
caaaagtacttaaaatcacaagaaaatcagttaataaaatatattgcggaattgaaaatt
gatggctcagcactatcgttgacatatgagaatggactattaacacgtggtttaacaaga
ggagatggaatagtaggagaagatattactcaaaatattcgtaccattttttctattcca
ttacatctaaatttagatgatccaccttccattatgcatgtaaatggggaagcattttta
cctctggatgaatttaagagaattaataaacagaagcaaaaagaaggcaaatcattgttt
gccaatcccagaaacgcagctgcaggaactctaagacagctagattcaaaaattgtgagc
gaacgaaagttacaattttttgcatactctttatatgctgataatttagatattaaaagt
caatgggatactttaaaatttctacaagaatgtggatttttagttaatccttactatcgg
ctatgtaagtctcttgatacagtaactaactactttaatgagtggaaaagtgcaaaaaag
catttgccctatatgacggatggagttgtgataaagattaattctcatatcttgcagaaa
gaattggcttatacacaaaggttccctcgttgggcaatcgcattaaaatatcctgcagag
gagatctcaacagtagttgaagatatcattttcaatacaggaagaactggagctgttact
ccgatggcagtaatgaacccggttcttctcggtggaacaatagtccgcaaggctacttta
cataatattgatcgtattgctcaattaggaatttgtatcggagatacagtcactattcgt
aaagctggtgaaataataccagaagtaattcgggtactaaaaacattacgtcatcataaa
accaaagtttttcaaatctctgaacgatgccctaaatgtaatagcatgcttgttagtttt
tcaaacgaggcagtggttcgttgtattaataattcttgtccagcaattttaaaaggaaat
ttaattcattggtcttcaagagatgctgtagatatttctggtttaggtgaaaaaattata
gatcttttaatcagtaatggcttggtaaattctatttcagacttgtatcatttaaatttt
caagaagtttctaatttagaaagaatgggaataaagtctgcagaaaatttaattaaatct
atagaaagtagtaaaacaaagtcttggacaaaggtactatatggattgggtattcatcat
gtagggtacacaacagctatattgttaacagaaaatttttctagtgttcagcagctattg
caagcgccttatgatactttggtaactattaagggaatagggaaagaagttgcttattca
attagaagttggttctcgcttgaagaaaaccagaaattaataagcgaattagataaaaat
ggctttgttttagaaaataaaaatttagggatcaatcaaaataagccagataaacaaata
ttttttaatattactttcgtgattactggaagcttaaatactttaaaacgaagtgagatc
aaaaacttgatagagaattttggaggtaaagtagttaattcagtaactaaaaaaacaaat
tatattttagtaggggaaaatcctggttctaaattagcagaaggaatgaaattaaatatt
attcgtttaaatgaaacagattttctcagaatactaaaggatgcgaatattgaaattaac
gaaatttaa
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