Cycloclasticus sp. PY97N: CPC19_09290
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Entry
CPC19_09290 CDS
T05126
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cyy
Cycloclasticus sp. PY97N
Pathway
cyy03030
DNA replication
cyy03410
Base excision repair
cyy03420
Nucleotide excision repair
cyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPC19_09290 (ligA)
03410 Base excision repair
CPC19_09290 (ligA)
03420 Nucleotide excision repair
CPC19_09290 (ligA)
03430 Mismatch repair
CPC19_09290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyy03032
]
CPC19_09290 (ligA)
03400 DNA repair and recombination proteins [BR:
cyy03400
]
CPC19_09290 (ligA)
Enzymes [BR:
cyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPC19_09290 (ligA)
DNA replication proteins [BR:
cyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPC19_09290 (ligA)
DNA repair and recombination proteins [BR:
cyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPC19_09290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPC19_09290 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPC19_09290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPC19_09290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ATI03647
LinkDB
All DBs
Position
complement(1913887..1915908)
Genome browser
AA seq
673 aa
AA seq
DB search
MTMHDDVKRRVQTLREEINQHNQNYYQYDAPKIPDADYDALLRELQLLEAENPELMSDDS
PTQRVGSAPLDSFQQVEHAVPMLSLDNAFDDDEFEAFDKRVRERADGFEDIEYLVEPKLD
GLAISLLYADGVLVRAATRGDGKRGEDVTENVKTIGAIPLSLKGDNLPLRLEVRGEVFMP
LSGFQQLNQQALALGEKPFANPRNAAAGSLRQLDSKITATRPLAFYSYGIGVVEGYELPQ
TQQALFQLLATWGLPVSDQVTTARGMQQCHQAYQVLAQKRALLPYEIDGVVYKVNDFALQ
KAIGFVSRAPRWAIARKFPAQEKMTEVIGIDVQVGRTGAITPVARLAPVFVGGVTVTNVT
LHNEGEMRRKDVRVGDTVIVRRAGDVIPEIVSVVLEKRKPASQLFEMPVSCPVCGSTVER
AEGEAIARCPAGLFCRAQVKESIKHFASRKAMDIDGLGDKIIEQLVAQDLVKTPADLYRL
THEQLSSLERMADKSASNIIAALEKSKVTTLPKFLYALGIREVGEVTAASLSSYFGQLDV
IQSATVEELEKVPDVGPIVAQHIVAFFELAHNREVIASLKNLGVSWPNVEAVPQDDQALS
GKVFVLTGTLSTMGRIEAKEALQLLGAKVTGSVSKKTDYVVAGEDAGSKLKKAQSLGVTV
LSEDDLIKLIAKD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcatgacgatgttaagcgacgtgtgcagacgctacgtgaagagataaatcaa
cataaccagaattattatcagtacgacgcaccaaaaattcctgatgccgattacgatgcc
ttattgcgagagcttcagttattagaggctgaaaacccagagctaatgagtgatgattcg
ccgacgcagcgcgtcggttcagctccgttagactcatttcagcaggtagagcatgcggtg
ccgatgctgtcattagataatgcctttgacgatgatgagtttgaggcatttgataagcga
gtgcgagagcgagctgacgggtttgaagatatcgaataccttgtcgagccgaaattggat
ggcttagctatttctttgttgtatgcggacggtgtgttagtacgtgctgcaacaagaggg
gatggtaaacgaggcgaagacgttaccgaaaatgttaaaactattggtgccattccactc
agtttaaaaggcgataatctaccattgaggctagaggtcaggggtgaagtgtttatgccg
ttgtctggttttcagcagctgaatcaacaggcattggcgttaggtgaaaagccttttgct
aatccaagaaatgccgctgcaggtagtttgaggcagctagattcaaaaataacagcaacc
cgtccactggctttttatagctatggtattggggtggtagagggttacgagctaccgcag
acacaacaggcgctgtttcagctgttggctacatggggtttgccagtgagtgatcaggtg
acgacagcaaggggcatgcagcaatgtcaccaagcctatcaagtgttggcgcaaaaaaga
gcgctattaccttatgagattgacggggtcgtttataaagttaacgattttgccttgcag
aaagccattggttttgtgtcaagagcgccgcgttgggcaatagcacgtaaatttccagca
caagaaaaaatgaccgaagtaatagggattgatgtgcaagtgggtagaacaggagccatt
acgccggttgctcgattggcacctgtttttgttggtggggttaccgttacgaatgtcacg
ttacataacgaaggtgaaatgcgcaggaaagatgttcgtgtgggtgatacggtgattgtc
aggcgtgccggcgatgtgattccagaaattgtttctgttgtattggaaaagagaaagcct
gcatcgcagctttttgaaatgccagtgtcttgtcctgtgtgcgggtcaacagtggagcgc
gccgagggagaggcgatcgcacgttgtccagctggcttgttttgtcgtgctcaagtgaaa
gagtcgatcaagcattttgcctcacgtaaggcgatggatatagatgggttgggtgacaag
attattgagcaattagtcgctcaggatttagttaaaacgccggctgatttgtatcgatta
actcacgagcagttgtcgagtttggagcgaatggccgataagtctgccagtaatattatc
gcggcacttgaaaaaagcaaggtaacgaccctgccgaagtttctgtatgcgttgggtatt
cgagaagtaggcgaggtgactgcggcaagcttatcgagctattttggacagctggatgtg
atacagagtgccactgttgaagagttggagaaggtgcctgatgttgggcctattgttgca
caacatatcgtggctttctttgagttggcgcataaccgtgaggtaatagcgagcttgaaa
aacttaggggttagttggcccaatgttgaagcagttccccaagatgatcaggctttatca
ggtaaagtctttgtgttgaccggtacattgtcgacgatggggcgtattgaagcgaaagaa
gccttgcaattattgggtgcaaaagtgactggaagcgtctcgaaaaaaaccgattatgtt
gttgccggggaggatgctggttcaaagttgaaaaaagcccagtcgctaggggtgacggta
ttatcagaagacgatttaataaagctaatagcaaaggactga
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