Corynebacterium zhongnanshanii: IAU67_05955
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Entry
IAU67_05955 CDS
T07917
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
czo
Corynebacterium zhongnanshanii
Pathway
czo03030
DNA replication
czo03410
Base excision repair
czo03420
Nucleotide excision repair
czo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
czo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IAU67_05955 (ligA)
03410 Base excision repair
IAU67_05955 (ligA)
03420 Nucleotide excision repair
IAU67_05955 (ligA)
03430 Mismatch repair
IAU67_05955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
czo03032
]
IAU67_05955 (ligA)
03400 DNA repair and recombination proteins [BR:
czo03400
]
IAU67_05955 (ligA)
Enzymes [BR:
czo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IAU67_05955 (ligA)
DNA replication proteins [BR:
czo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IAU67_05955 (ligA)
DNA repair and recombination proteins [BR:
czo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IAU67_05955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IAU67_05955 (ligA)
MMR (mismatch excision repair)
DNA ligase
IAU67_05955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IAU67_05955 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QNP91597
LinkDB
All DBs
Position
1330306..1332393
Genome browser
AA seq
695 aa
AA seq
DB search
MFSQLTPATAHAHTVEWHIVTDPSLTELTQHWQRLAEQVRHHRHQYYYATPEISDADFDQ
LLTDLKNFEEEHPEAVTGPSPTQEVAPAPPTSTAFRNVNHRERMLSLDNVFDTEQLQQWL
DRTPASEYLTELKIDGASINLLYIQGKLELALTRGDGTTGEDITHNARTLSDIPDTLQGD
NIPELVEIRGEVFIDVDDFAAMNAQRQAEGLKMFANPRNAAAGAMRQKNAEDTAKRPLKL
ICHGIGAREGFDVDSQWDAYQAIESWGLPVSPYTKRLRSTKEVLREVTYWGEHRHSATHE
MDGLVIKVNDLADQLSLGTTSRAPRWAIAYKYPPEEAMTVLKNIRVGIGRTGRATPYAVM
EPKYVAGSTISMATLHNPSEAHRKGIQLGDSIMIRKAGEVIPEVLGPVEDARTGRERPFI
FSSLCPECGTPLAPSKEGDADWRCPNTRRCPGQLHTRLTYLAGRGAFDIDALGEKAAYDL
IHSGVLSDESTLFSLTTEDLERTSAYTTRSGALNKQGTTLLEKLQAAKDVDLWRVIVALS
IRHVGPTAAKALAKHYGSLEKIRQASPESMAEIDGVGATIAQSIADWFTVDWHVDIVEAW
AAAGVRMEEDLPEPDDLPEATLEGLTIVVTGTLEEFDRSQAKEAIESRGGKAAGSVSKNT
DYLVAGAKAGSKLTKAEQLGVPVLDEAGFKELLGL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgttttcacaactaactcccgcgaccgcacacgctcacaccgtagaatggcatatcgtg
actgacccttcgctgaccgaactcacccaacactggcaacgcctcgccgagcaggtgcgc
caccaccggcaccagtattactacgccacgccggagatctcggacgcggacttcgaccag
ctcctcaccgacttgaagaacttcgaggaggagcaccccgaggccgtcacgggccccagc
cccacacaggaagtggctcccgctccccctaccagcacagcttttcgcaatgtgaaccac
cgtgagcgcatgctctccctggacaacgtcttcgataccgagcagctccagcagtggctc
gaccgcaccccagccagcgaatacctcactgaactcaagatcgacggcgccagcatcaac
ctgctctacatccaaggcaagctagagctagccctcacccgcggtgacggaaccaccggc
gaagacattacccacaacgcccgcacactgtccgacatcccggacacccttcagggtgac
aacatcccggagctcgtggaaatccgcggagaggtgttcatcgacgtggacgactttgcc
gcgatgaacgcccagcgccaggccgaggggctcaaaatgttcgccaacccccgcaatgct
gccgccggtgcgatgcgccaaaagaatgcagaggacacggccaagcgcccgctgaagctc
atctgccacggcatcggcgcccgcgagggattcgacgtggacagccagtgggacgcctac
caggctatcgaatcctgggggctgcccgtcagcccctacaccaagcgtctgcgcagcacg
aaggaagtgctgcgcgaggtgacgtattggggcgagcatcgccacagcgccacccacgag
atggatggcctggtcattaaggtcaacgatctcgccgaccagctttccttgggcaccacc
agccgcgctccccgctgggcgatcgcctacaagtacccgcccgaagaggcgatgaccgta
ctgaagaacatccgcgtgggcatcgggcgcaccggccgggccacgccgtatgccgtgatg
gagccgaagtatgttgcaggttccaccatcagcatggcgacgctgcacaacccttcggag
gcgcaccgtaagggcatccaactgggtgattccatcatgatccgcaaagccggcgaggtc
atccccgaggtcctaggccccgtggaggatgcccgcacgggacgcgaacgccccttcatc
ttctcctccctgtgcccggaatgtggcacgcccctggctccttcgaaggaaggcgacgcc
gactggcgctgccccaacacccgccgctgccccggccagctgcacacgcgcttgacctac
ctcgccgggcggggcgctttcgacattgacgccctgggggaaaaggccgcctacgacctg
atccactcgggtgtgctgagcgacgagtccactcttttctccctcaccaccgaggacctg
gaacgaacgagtgcctacaccacccgttccggcgctctgaataagcaaggaacaaccctg
ctggagaagctgcaggctgccaaggacgtggacctgtggcgagtgatcgtggcgctgtcc
atcaggcacgtcggccccacggcggcgaaggccctggcgaagcactacggctctctggag
aagatccgccaggccagcccggagagcatggccgagatcgatggcgtgggcgccaccatc
gcccagtccatcgccgactggttcacggtggactggcacgtggacatcgtggaggcctgg
gctgcagccggggtccggatggaggaggatctgcctgagccggacgaccttcccgaggcc
acactggagggcctcacgattgtggtgaccggcacattggaggagttcgaccgctcccag
gccaaggaggccatcgagtcgcgtggcgggaaggccgccggaagtgtctcgaagaacacg
gactacctggtcgccggcgcgaaggcgggctccaagctcacgaaggcggagcagttgggc
gtgccggttctggacgaagcgggcttcaaggagctcctgggtctgtag
DBGET
integrated database retrieval system
