Deinococcus actinosclerus: AUC44_08685
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Entry
AUC44_08685 CDS
T04259
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dab
Deinococcus actinosclerus
Pathway
dab03030
DNA replication
dab03410
Base excision repair
dab03420
Nucleotide excision repair
dab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AUC44_08685
03410 Base excision repair
AUC44_08685
03420 Nucleotide excision repair
AUC44_08685
03430 Mismatch repair
AUC44_08685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dab03032
]
AUC44_08685
03400 DNA repair and recombination proteins [BR:
dab03400
]
AUC44_08685
Enzymes [BR:
dab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AUC44_08685
DNA replication proteins [BR:
dab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AUC44_08685
DNA repair and recombination proteins [BR:
dab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AUC44_08685
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUC44_08685
MMR (mismatch excision repair)
DNA ligase
AUC44_08685
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUC44_08685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
ALW88954
UniProt:
A0A0U4BZH2
LinkDB
All DBs
Position
complement(1781619..1783640)
Genome browser
AA seq
673 aa
AA seq
DB search
MTPEFDRYLALRAEVAAHNRAYYEQDAPSIPDDAYDALARELRDLEAAHPDWAAQAGADS
PAQTVGGAPAAAFQPVNHPTPMTSLDNAFDDAELRDWQEKLARALGLPADSDDFTFTGEL
KIDGLSVNLYYLDGELQWAATRGNGVTGEIVTAQVLTVPGIPTTLPGLSGELEVRGEVYM
SRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRSRNLKAILYALGKRDGVPAR
TQSEVLAWLAGQGFPTSAHSETLRGLAAAADYHARMTAARSAFKFDADGTVLKLDDLRAQ
EEAGFTSRAPRWAIAYKFPVEEVETTLEAITVNVGRTGKLAPLAHLAPRLIEGSTVSRAT
LHNEDFIRDLDLRIGDTVVVRKSGGVIPQIMRVLTERRPDGALPFEFPTHCPECGHEVTR
AEGDANTYCPNPACPSQAFERIRYFVSRGAMDVRGIGEKLVAQLIETGLVRDAADLYGLN
AEQLAALERGGEKKAQNILAQLDASRSRPLWRLVNALGMNHVGERNAQALARAFGTLDAL
LSATPEQIEHVPGLGGVIAQSVTASLADPSMRGLIARLRDHGVNPQEEQVTRGEQLQGLN
FVITGTLGRPREAIKAQLEQAGGRVTGSVTKKTSYLIAGEEAGSKLARAQELGVTVLDEA
ALDELLAARGVTN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccgagtttgaccgttacctggccctgcgggccgaggtggccgcccacaaccgc
gcctactacgagcaggacgcgcccagcatccccgacgacgcctacgacgccctggcccgt
gagctgcgggacctggaagcggcgcaccccgactgggcggcgcaggccggggccgacagc
ccggcgcagacggtggggggcgcgcccgccgccgccttccagccggtgaaccaccccacg
cccatgaccagcctggacaacgccttcgacgacgcggaactgcgcgactggcaggagaag
ctggcgcgcgcgctgggcctcccggccgacagcgacgacttcacgttcacgggcgaactg
aagatcgacggcctgagcgtgaacctctactacctggacggcgagttgcagtgggcggcc
acgcgcggcaacggcgtgaccggcgagatcgtcaccgcgcaggtgctcaccgttccgggc
attcccaccacgctgcccggcctgagcggggaactggaggtgcgcggcgaggtgtacatg
agccgcgcggacttcgcggcgttcaacgcgcaggccgaggaactcggcacgccgctgctg
aagaatccccgcaacggcgcggccggcgcgctgcggcagaaggacccggaggtgacgcgc
agccgcaacctgaaggccatcctgtacgcgctgggcaaacgcgacggcgtgcccgcccgc
acgcagagcgaggtgctggcgtggctggcgggccagggttttcccaccagcgcccacagc
gagaccctgcgcgggctggccgccgccgccgactaccacgcccgcatgaccgccgcgcgc
agcgccttcaagttcgacgcggacggcaccgtcctgaaactggacgacctgcgcgcccag
gaggaggcgggcttcaccagccgcgcgccgcggtgggccatcgcgtacaagttcccggtc
gaggaggtcgagacgaccctggaggcgatcaccgtgaacgtgggccgcaccgggaagctc
gcgccgctggcgcacctcgcgccgcgcctgatcgagggcagcaccgtcagccgcgccacc
ctgcacaacgaggacttcatccgcgacctcgacctgcggatcggggacacggtcgtggtg
cgcaagtccggcggcgtgatcccacagatcatgcgcgtcctgaccgagaggcgcccggac
ggcgctctgcccttcgagttccccacccactgccccgagtgcgggcacgaagtcacgcgc
gccgagggcgacgcgaacacctactgcccgaaccccgcctgcccctcgcaggccttcgag
cgcatccggtacttcgtgtcgcgcggcgcgatggacgtgcgcggcatcggcgagaaactg
gtcgcgcagctcatcgagaccggactcgtgcgcgacgccgccgacctgtacggcctgaac
gccgagcagctcgccgcgctggaacgcggcggcgagaagaaggcgcagaacatcctggcg
cagctcgacgccagccggagcaggccgctgtggcgcctcgtgaacgcgctgggcatgaac
cacgtcggggaacgcaacgcccaggcgctcgcccgcgccttcggcacgctggacgcgctg
ctctcggccacgcccgagcagatcgagcacgtccccggcctgggcggcgtgatcgcccag
agcgtcaccgcgtccctggccgaccccagcatgcggggcctgatcgcccgcctgcgcgac
cacggcgtgaacccgcaggaggaacaggtcacgcgcggcgaacagctccagggcctgaac
ttcgtgatcaccggcacgctgggccgcccgagggaggccatcaaggcgcagctcgaacag
gccggagggcgcgtcacgggcagcgtcacgaagaagaccagctacctgatcgcgggcgag
gaggcgggcagcaaactggcccgcgcgcaggaactcggcgtgaccgtgctggacgaggcg
gccctggacgagctgctcgccgcgcgcggcgtgaccaactga
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integrated database retrieval system
