Dactylosporangium sp. AC04546: KZZ52_21030
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Entry
KZZ52_21030 CDS
T10220
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dact Dactylosporangium sp. AC04546
Pathway
dact03030
DNA replication
dact03410
Base excision repair
dact03420
Nucleotide excision repair
dact03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KZZ52_21030 (ligA)
03410 Base excision repair
KZZ52_21030 (ligA)
03420 Nucleotide excision repair
KZZ52_21030 (ligA)
03430 Mismatch repair
KZZ52_21030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dact03032
]
KZZ52_21030 (ligA)
03400 DNA repair and recombination proteins [BR:
dact03400
]
KZZ52_21030 (ligA)
Enzymes [BR:
dact01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KZZ52_21030 (ligA)
DNA replication proteins [BR:
dact03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KZZ52_21030 (ligA)
DNA repair and recombination proteins [BR:
dact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KZZ52_21030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KZZ52_21030 (ligA)
MMR (mismatch excision repair)
DNA ligase
KZZ52_21030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KZZ52_21030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
PTCB-BRCT
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
WVK87771
LinkDB
All DBs
Position
4709087..4711117
Genome browser
AA seq
676 aa
AA seq
DB search
MFGSVEEYRAAVSEIRAAAALYYGGAELAMDDAVYDGLMARVAATEAEHPEWKVDESPTE
VVAAGGGVVGDVVHSTPMLSLDNVFDEETLRRWATRLDRLLGRPAAGYTVEPKIDGLAIA
ARYVDGRLVQVATRGDGRAGEDVTAQARRAVGLPELLAEPVTLEIRGEVFMTDADFEVAN
GMRIASGEPAFAHPRSAAAGTLRAQDRTYDAPLSFLAYAVHGRGEDAHSAEMAEIARLGV
ATTAGSPTGMPVCVTVDEVLTAVQALNAARGTLGFGIDGAVIKADQPADRATAGFSSRAP
RWGIAYKFPADTRTTKLLRIEVQIGRTGVITPVAVLEPVQISGVIVTSATLHNFDDLVRR
NVRPGDTVFVRRAGDVIPEVTGAKLDERPADSAPFEPPSVCPRCAGEIDRAQKRWRCTRG
RACGAHESLAYYAARHSMDIEGLGGKVLDLLVTAGHVTDPADLYDLDVPTVASLERMGEL
SATKLVAAIQSSKQQPLSRVLTGLGVRMTGRSMSRRLARHFGTMDALLSATVDDLQQVEG
VGPERAVMIAAELVEITPLIARLSARGVNLTEPTEPTPPPSSSLSPEPGAARLPLQKEDG
TPMTVVVTGAVPGLTRDEGNEAVERLGGRAASSVSKRTDLVVVGEGAGSKAQKAAELGIQ
IMPAADFAALLAPTPA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgttcggatcggtggaggagtaccgcgcggccgtctcggagatccgggccgccgcggcg
ttgtattacggcggcgccgagctcgccatggacgacgcggtctacgacgggctcatggcc
cgggtggctgccaccgaggccgagcaccccgagtggaaggtcgacgagtcgccgaccgag
gtcgtcgcggccggcggcggggtcgtcggcgacgtcgtccacagcacgccgatgctgagc
ctcgacaacgtcttcgacgaggagacgctgcgccgctgggcgacccggctcgaccggctg
ctcggccgccccgccgccggctacacggtagagccgaagatcgacggcctggccatcgcc
gcgcgctatgtcgacggccgcctcgtgcaggtcgccacccgcggcgacggccgcgccggc
gaggacgtcaccgcccaggcccgccgggccgtcggcctgccggagctgctggccgagccg
gtgacgctggagatccgcggcgaggtcttcatgaccgacgccgacttcgaggtcgccaac
ggcatgcgcatcgcctccggcgagcccgccttcgcccacccgcgcagcgccgccgccggc
acgctgcgcgcccaggaccgcacctatgacgcgccgctgtccttcctcgcctacgcggtc
cacggccgcggcgaagacgcccactcggccgagatggccgagatcgcccgcctcggcgtg
gccaccaccgccggctcgcccaccggcatgcccgtctgtgtcaccgtcgacgaggtcctc
accgccgtgcaggccctcaacgccgcccgcggcaccctgggcttcggcatcgacggcgcc
gtgatcaaggccgaccagcccgccgaccgcgccaccgccggcttctccagccgcgccccg
cgctggggcatcgcatacaagttcccggccgacacccgcaccaccaagctgctgcgcatc
gaggtccagatcggccgcaccggcgtcatcaccccggtcgccgtcctcgagccggtccag
atcagcggcgtcatcgtcacgtcggccaccctgcacaacttcgacgacctggtccgccgc
aacgtccgccccggcgacacggtcttcgtccgccgcgccggcgacgtcatcccggaggtc
acgggcgccaagctcgacgagcgcccggccgactcggcccccttcgagcccccgtcggtg
tgcccccgctgcgcgggcgagatcgaccgcgcgcagaagcgctggcgctgcacccgcggc
cgcgcctgcggcgcccacgagtcgctggcgtactacgccgcccgccactcgatggacatc
gagggcctgggcggcaaggtcctcgacctgctggtcaccgccggccacgtgaccgacccg
gccgacctgtatgacctggacgtccccacggtcgcgtccctggagcgcatgggcgagctc
tccgccaccaagctggtggccgccatccagtcctccaagcagcagccgctgtcgcgcgtc
ctgacgggcctgggcgtgcgcatgacgggccgctcgatgtcccgccgcctggcccgccac
ttcggcacgatggacgccctgctgtccgccacggtcgacgacctccagcaggtcgagggc
gtcggccccgagcgcgccgtgatgatcgccgccgagctggtcgagatcaccccgctgatc
gcccgcctgtcagcgcgtggcgtcaacctgaccgagcccaccgaaccgaccccgccaccg
tcctcgtcgctgtcgccggagccgggcgccgctcgcctgccgctgcagaaggaggacggc
accccgatgacggtggtggtgacgggcgcggtccccggcctgacccgtgacgagggcaac
gaggccgtagagcgtctgggcggccgggcggcgagctcggtgtccaagcgcaccgacctg
gtcgtggtgggcgagggcgccggctcaaaggcccagaaggccgcggagctgggcatccag
atcatgccggcggccgacttcgccgcgctgctggccccgaccccggcgtaa
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