Desulfofarcimen acetoxidans: Dtox_0763
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Entry
Dtox_0763 CDS
T00986
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dae
Desulfofarcimen acetoxidans
Pathway
dae03030
DNA replication
dae03410
Base excision repair
dae03420
Nucleotide excision repair
dae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dtox_0763
03410 Base excision repair
Dtox_0763
03420 Nucleotide excision repair
Dtox_0763
03430 Mismatch repair
Dtox_0763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dae03032
]
Dtox_0763
03400 DNA repair and recombination proteins [BR:
dae03400
]
Dtox_0763
Enzymes [BR:
dae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dtox_0763
DNA replication proteins [BR:
dae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dtox_0763
DNA repair and recombination proteins [BR:
dae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dtox_0763
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dtox_0763
MMR (mismatch excision repair)
DNA ligase
Dtox_0763
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dtox_0763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
HHH_8
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ACV61673
UniProt:
C8W209
LinkDB
All DBs
Position
772382..774415
Genome browser
AA seq
677 aa
AA seq
DB search
MELKEAGKRVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLLSEHSP
TQRVGGKPKEGFTTVTHRVPMLSLANSFSEQELKDFDRRVRGALAGEEVNYVVELKIDGL
AVSLFYENGLFQRGATRGDGETGEDITENLKTIRSLSLQLKEAVPVLEVRGEVYMSGEAF
RRLNKSREAEDQPLFANPRNAAAGSLRQLDPRITSSRQLSAFIYAVGYYEGVSLSGHEEA
LRYLQDLGFPVSRYYRKFADIEEVLAYCRDWEARRFELPFAIDGLVIKVDSLEQQLKLGA
TAKSPRWSIAYKFPPEQAVTKVKDIIINVGRTGVLTPTALLDPVRLAGSTVSRATLHNED
IIKEKDVQIGDTVVVQKAGEIIPEVVRVLSEKRSGGEIPFKMPQYCPDCGAKVVRLEGEA
ASRCTGMACPSQLREGLIHFVSRGAMDIAGLGPAVITQLLDTGLIHDAADLYNLRYEDLV
NLERFGQKSVQNLLQALEQSKKASLGRLIFALGIRHVGERAAKTLARHFGSLQNLMAAGL
EELVGIPEIGTKIAGSIITFFEQEQNLSVVDKLVRAGVNIVEKDTEASTAGSLEGKTFVL
TGTLRSFTRETAKQFIEGLGGKVTASVSKSTDYVLAGENPGSKYDKAVKLGIKVIDEAYF
KELSVGKSPGKADHSLS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
ttggagttgaaggaagccgggaaaagagttttagaactgcggcgggaaatagaggagcat
aattataattactatgttatggataaccctgtcataggagacgccgaatatgatcgttta
atgcttgagctgacagcgttggagcagcagtttccggatctgcttagcgagcattcaccg
actcagcgggtgggtggaaagccaaaggaaggttttactaccgtaactcatagagtgcct
atgttaagcctggccaactcttttagtgagcaggagctgaaggattttgaccgtcgggtc
cgcggtgctctggcaggtgaagaggttaactatgtagttgagcttaaaattgacggactg
gctgtttccctgttttatgagaacggtctgtttcaacgcggcgctaccagaggagacggt
gaaacaggtgaggatattaccgaaaatcttaagactattcgcagcctctctctgcaactg
aaagaggccgtgccggttctggaagtgaggggtgaggtgtatatgtccggggaggctttc
agacggttgaataaaagccgggaagcggaagatcaacccttgtttgccaatccccgcaac
gccgcggcaggctcactcaggcagctcgatcccaggataacttccagcaggcaattgtct
gcctttatttacgcggttggttattatgaaggggtgagcctgagcggtcacgaagaggcg
ttgcgttacttgcaagacttgggctttccggttagccgttattatcgcaaatttgctgat
attgaggaggttctggcctattgccgggattgggaggccaggcgttttgaactgcctttt
gccattgatggtttagtcattaaggttgattccctggagcagcagctaaaattgggagct
actgccaaaagcccccgctggtcgatcgcttataaatttcctcccgagcaggcggttact
aaggttaaggatattataataaatgttggccgtaccggtgttctcacgccaactgctctt
ttggatcctgtgcgtttggccgggtcgactgtcagccgggcgactttacataatgaagac
attataaaggaaaaagatgtgcagataggtgatactgttgttgtccagaaggcgggcgag
atcatacctgaagtagtcagggtattgtcggaaaaacgcagcggcggggagattcccttt
aaaatgccgcagtattgtcctgattgcggagcaaaggttgttcgcctggagggtgaggct
gcttcccgctgtacgggtatggcctgtccgtcgcagctgagggagggtttaattcacttt
gtttcgcggggagccatggatatagccggactgggaccggcagttatcacacagctctta
gatacaggcttaatccatgatgccgctgacttatataatttgcggtacgaggacctggtt
aatctggagaggtttggccaaaagtcagttcagaatctgctgcaggccctggagcaaagt
aaaaaagcctctctgggcagactgatatttgctctgggtattcgccatgtgggggagagg
gcggctaaaactctggcccggcattttggttcgctgcagaatttgatggcagccgggctt
gaagagttggtgggaataccggagattggtactaagatagccgggagtattattactttt
tttgagcaggagcagaacctttctgttgttgataaactggtgcgggccggtgtaaatatt
gtggaaaaagacacagaggcttcaactgccggttctttggaaggtaaaacttttgtttta
accggaacactccggtcttttacccgtgagactgcaaaacagtttattgagggcttggga
ggtaaggtaactgcatctgtcagcaaaagcactgattatgttctggcaggtgagaatccc
ggcagtaaatatgataaggccgttaaattgggtattaaagttatagatgaggcttatttt
aaagaattatctgttggcaaatcacccggcaaagcagatcatagcctatcgtaa
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