Diaphorobacter aerolatus: H9K75_01865
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Entry
H9K75_01865 CDS
T06773
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
daer
Diaphorobacter aerolatus
Pathway
daer03030
DNA replication
daer03410
Base excision repair
daer03420
Nucleotide excision repair
daer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
daer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9K75_01865 (ligA)
03410 Base excision repair
H9K75_01865 (ligA)
03420 Nucleotide excision repair
H9K75_01865 (ligA)
03430 Mismatch repair
H9K75_01865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
daer03032
]
H9K75_01865 (ligA)
03400 DNA repair and recombination proteins [BR:
daer03400
]
H9K75_01865 (ligA)
Enzymes [BR:
daer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9K75_01865 (ligA)
DNA replication proteins [BR:
daer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9K75_01865 (ligA)
DNA repair and recombination proteins [BR:
daer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9K75_01865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9K75_01865 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9K75_01865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9K75_01865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
5_3_exonuc
DUF4796_N
Zn_Ribbon_TF
DUF4756
Motif
Other DBs
NCBI-ProteinID:
QNP48960
UniProt:
A0A7H0GKZ4
LinkDB
All DBs
Position
386218..388311
Genome browser
AA seq
697 aa
AA seq
DB search
MSDSIDLFPESPQDVPAKVVAKVNALREQLGRWAHEYYVQDAPTVPDGEYDRVFQQLQAL
EAAYPQIVTPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEASGALAFDARVRKELE
LPVSAAPVEYVAEPKFDGLAMNLRYENRMLVQATTRGDGEVGEDVTHNIRTIRQIPLTLP
ADKDVPPVLEVRGEVYMRRADLEKLNERQAAAGAKLFANPRNAAAGAVRQLDSSISAQRR
LSFFAYGLGEVSAASDGGPVFQTHFAMLQTLKGWGFPVAPQVCVARGAADLVAFHERMGA
ERAALPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTRLEGIDVQVGRTG
KLTPVARLVPVQVGGVVVTNATLHNIFEIRKKDVRKGDTVVVRRAGDVIPEVVGRVPGER
PHYVPNFRMPAQCPICGSEVVREKGEANHRCSGGLFCPAQRKEAILHFAARRAMDIEGLG
DKLVDQLVEGNVVRVLPDLYRLGLSALASLDRMAEKSAQNVLAALEKSKQTTLQRFLFGL
GIRHVGESTAKDLAKHFGNLDAIMDASVEALLQVNDVGPVVAESIHTFFAQPHNREVVEQ
LRACGVTWQEGEPRQQGEQLLSGMTVVLTGTLPTLSRDQAKDMLEAAGAKVSGSVSKKTS
YVVAGAEAGSKLDKAQELGVTVLDEAAMLALLGRAPG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagcattgatcttttccccgagtcgccgcaggacgtgcctgccaaggtggtc
gccaaggtgaacgccctgcgcgagcagttgggccgctgggcgcatgaatactatgtgcag
gacgcgcccacggtgcccgacggcgagtacgaccgcgtgttccagcaattgcaggcgctg
gaggcagcctatccgcagatcgtcacgcccgactcgcccacgcaacgcgtgatcggtgcg
gtgctcgacgggctcacgccggtgcgccacgcggtgcccatgctcagcatccagaccgag
accgacaacgaggccagcggcgcgctggcctttgatgcgcgcgtgcgcaaggaactcgag
ttgcccgtgtcggctgcgccggtcgagtacgtggcggagcccaagttcgatggcctcgcg
atgaacctgcgctacgagaaccgcatgctcgtgcaggccacgacgcgcggcgacggcgag
gtcggcgaagacgtgacgcacaacatccgcacgatccgccagattccgttgacgctgccc
gccgacaaggacgtgccgccggttctcgaagtccgcggcgaggtctacatgcgccgtgcg
gatctggaaaagctcaacgagcggcaggcggcggcgggcgccaagctgttcgccaatcca
cgcaatgcggcggcgggtgcggtgcgccagctcgactccagtatctcggcgcagcgacgc
ctgtcgttcttcgcctacggccttggcgaggtgtcggcggcctccgatggcggaccggtg
tttcagacgcatttcgccatgttgcagacgctcaagggctggggttttccggtggccccg
caagtctgcgtggcgcgcggtgcggcggatctggtcgcattccacgaacgcatgggtgcc
gagcgcgcggcgttgccatacgagatcgacggcgtggtctacaaggtcaacagcctcgcg
ctacagcgccagctgggcttcaagtcgcgtgagccgcgctgggccgtggcgcacaaatat
cccgcgcaggagatgcccacgcgcctcgaaggcatcgacgtgcaggtcggccgcacgggc
aagctcacgcccgtggcgcgactcgtgccggtgcaggtcggcggcgtggtggtgacgaat
gcaacgctgcacaacatcttcgagatccgcaagaaggacgtgcgcaagggcgataccgtc
gtggtgcgccgcgcgggcgacgtgattcccgaagtggtggggcgtgtgccgggagagcgg
ccgcactatgtgccgaacttccgcatgcccgcccaatgcccgatctgcggcagcgaagtg
gtgcgcgaaaagggcgaggccaaccatcgttgctcgggcggcctgttctgcccggcgcag
cgcaaggaggcgattctgcatttcgccgcgcgccgtgccatggacatcgaagggctgggc
gacaagctcgtcgatcagctcgttgaaggcaatgtggtgcgcgtgcttccggatctctac
cggctgggcctgagcgcgttggcgtcgctcgaccgcatggccgagaagtccgcacagaac
gtgctcgcggcgctggaaaaatccaagcagacgaccttgcagcgttttttgttcggcctg
ggtattcgccatgtcggcgaatccacggcgaaggatctggcgaagcacttcggcaatctg
gacgccatcatggacgcaagcgtcgaggcgctgttgcaggtcaacgatgtcgggccggtg
gtggccgagtcgatccacacgttcttcgcccagccgcacaaccgcgaggtggtcgaacaa
ctgcgcgcctgcggcgtgacctggcaggagggcgagcccagacaacagggcgagcaattg
ctcagcggcatgacggtggtactcaccggcacgctgcccacgctgagccgtgatcaggcc
aaggacatgctcgaagccgctggcgcaaaggtctcgggctcggtgagcaagaaaaccagc
tatgtggtggccggggccgaggcgggcagcaagctcgacaaggcgcaggagctcggcgtg
acggtgctcgacgaagccgccatgctggcattgctgggccgcgcgcccggctga
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integrated database retrieval system
