Dechloromonas aquae: VX159_09895
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Entry
VX159_09895 CDS
T10882
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
daj Dechloromonas aquae
Pathway
daj03030
DNA replication
daj03410
Base excision repair
daj03420
Nucleotide excision repair
daj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
daj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VX159_09895 (ligA)
03410 Base excision repair
VX159_09895 (ligA)
03420 Nucleotide excision repair
VX159_09895 (ligA)
03430 Mismatch repair
VX159_09895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
daj03032
]
VX159_09895 (ligA)
03400 DNA repair and recombination proteins [BR:
daj03400
]
VX159_09895 (ligA)
Enzymes [BR:
daj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VX159_09895 (ligA)
DNA replication proteins [BR:
daj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VX159_09895 (ligA)
DNA repair and recombination proteins [BR:
daj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VX159_09895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VX159_09895 (ligA)
MMR (mismatch excision repair)
DNA ligase
VX159_09895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VX159_09895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WVT82997
LinkDB
All DBs
Position
complement(2165873..2168287)
Genome browser
AA seq
804 aa
AA seq
DB search
MPLVDAAAARAAALRAAALRGELAAHDRAYYVLDAPTVPDAEYDRLFRELQALERDYPEL
ATPDSPTQRVGGRPLPEFAPVVHAQPMLSIQTETDTEASGAANFDARIRRELELPDSALP
VEYAAELKFDGLAVSLRYEHGILVRGATRGDGSTGEDVTQNLRTLRQIPLRLHGAAPAVL
EVRGEVYMRRDDLARYNAAAAARGEKTLVNPRNAAAGSIRQLDPAIAAARPLCFFAYGVG
AVEGWEWPKTHAAVLDALAAFGLPVCAERAVVRGAEELADFHRRVAALREQLPFDIDGVV
YKVNSLALQARLGFRSREPRWAVAHKYPPQEALTVVEAIDIQVGRTGALTPVARLQPVFV
GGVTVTNATLHNADEVARKGGICVGDTVSVRRAGDVIPEVVAVVAERRPANAVAFVMPDA
CPVCGAHVVREPGEAVTRCSGGFSCRAQRIQAILHFASRRMMDIDGLGERYVERLVEFDY
VHGVADLYRLTLADLLEMKRRADERDGVVPETVKAGQVATRWAENLLAAIAASRRPRLAR
LLFALGIRHVGESTAKTLADWLGSVERVRRAPAPLLAVLPDIGATVASAIADFFAEERNA
RALDDLLCPEVGVVPADEHPPHPALAERLAWEQLYVALDIPRLTPLRARQLAALVDGTTL
AASGVDTARLSAAALPGEVIDALVAWLAQPGKRGLLAALARQRDDLLAAVPLASPTAADA
APLAGKTCVLTGTLPTLTRDQAKVLIEAAGGKVSGSVSKKTDYVVAGEEAGSKLDKAREL
GVAVLDEAALLQLLNSQGVADEKS
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgccgctggtagatgctgccgcagcgcgcgccgccgcgctgcgggccgccgccttgcga
ggtgaactggcggcgcatgatcgggcctactacgtccttgatgcgcctaccgttccggat
gcagagtacgaccgcttgttccgcgaactgcaggcactggagcgcgattatcctgaactg
gcgacaccggattctcccacccagcgtgtcggcgggcgaccgctgcccgagttcgcgccg
gtggtacacgcacagccgatgctgtcgatccagaccgaaaccgataccgaggccagcggc
gcggccaatttcgatgcccgtatccggcgtgaattggagttgcctgacagcgcgctgccg
gttgagtacgcggccgagctcaaattcgatgggctggcagtcagcctgcgctacgaacat
ggcatcctggtgcgcggcgcgacccgaggcgacggtagtaccggcgaggatgtgacgcaa
aatctgcgcaccctgcggcagattcctttgcgtctgcacggtgccgcccccgccgtgctg
gaagtgcgcggcgaggtgtacatgcgccgcgacgatctggcccgctataacgccgccgct
gccgctcgcggcgagaagaccctggttaatccgcgcaatgcggctgccggcagcatccgc
cagctggacccggcaattgcggcagcgcgtccgctgtgtttcttcgcctatggcgttggc
gcggtcgaaggctgggaatggccgaaaacccacgccgccgtcctcgatgcgctggcggct
ttcggtctgccggtctgtgccgaacgggcggtcgtgcgcggtgctgaggaactggcggac
tttcatcgccgggttgcggctttgcgcgaacagttgccgttcgatatcgacggcgtggtg
tacaaggtcaattccctggccttgcaggcgcgcctcggctttcgcagtcgtgagccgcgc
tgggcggtggcgcacaaatatccgccgcaggaagcgttgaccgtggtcgaggcgatcgac
atccaggtcggccgtaccggcgcgctgaccccggtcgcccgtctgcagccggttttcgtc
ggcggcgtgacggtgaccaatgcaaccctgcacaacgccgacgaagtcgcgcgcaagggc
ggcatctgcgtcggcgatacagtcagtgtgcgccgggccggcgatgtcattcccgaagtc
gtggcggtggttgcagagcggcggccggcgaacgcagtggctttcgtcatgcccgatgcc
tgtccggtgtgtggcgcgcatgtggtgcgtgagccaggcgaagcggtgactcgttgctcc
ggcggcttttcctgccgggcgcagcgaatccaggcgattctgcactttgccagtcggcgg
atgatggacatcgacggcctgggcgagcgctacgtcgagcggctggtcgagttcgactac
gtgcacggcgtggccgacctgtatcgcctgaccctcgctgatttgctggaaatgaaacgg
cgcgctgacgagcgcgacggcgtcgtgccggaaacggtcaaggccggacaggtcgccact
cgctgggcggaaaacctgctggcggcgattgccgccagccggcggccgcgtcttgcccgc
ttgctttttgcgctggggattcgtcacgttggtgaaagtaccgccaaaaccctggctgac
tggctgggcagcgttgagcgggtgcgccgggcgccggctcccttgctggccgtgctgccg
gacatcggggcgacggtcgcgagcgcgattgccgatttttttgccgaggaacggaatgcg
cgggcgcttgacgacctgctttgtccggaagtcggtgtggtgcctgccgatgaacatccg
ccgcatccggcgctggccgagcggctggcctgggagcagttgtacgtcgcactcgacatc
ccgcgcttgacccccttgcgtgccaggcaactggcggcgctggtcgatggcacaaccctg
gcggcaagcggtgtcgatactgcccgcctgtcggcggcggcactgcccggcgaggtgatc
gatgcgctggttgcctggctggcacagcccggcaagcgcggcctgctggcggctttggcc
cggcagcgggacgatttgctggctgccgtaccgctggcctcgccgacggctgcggacgct
gcaccgctggccggcaagacatgtgtcctgaccggtaccttgccgacgctgacccgcgac
caggccaaggtgctgatcgaagctgcgggcggcaaggtctccggttcggtctcgaagaaa
accgattatgtggttgccggcgaagaggccggctccaaactcgacaaggcccgggaactt
ggcgttgccgtgctcgacgaagcggccttgttgcagttgttgaattctcagggagttgca
gatgaaaaaagttag
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