Desulfobacca acetoxidans: Desac_2405
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Entry
Desac_2405 CDS
T01454
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dao
Desulfobacca acetoxidans
Pathway
dao03030
DNA replication
dao03410
Base excision repair
dao03420
Nucleotide excision repair
dao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Desac_2405
03410 Base excision repair
Desac_2405
03420 Nucleotide excision repair
Desac_2405
03430 Mismatch repair
Desac_2405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dao03032
]
Desac_2405
03400 DNA repair and recombination proteins [BR:
dao03400
]
Desac_2405
Enzymes [BR:
dao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Desac_2405
DNA replication proteins [BR:
dao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Desac_2405
DNA repair and recombination proteins [BR:
dao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Desac_2405
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desac_2405
MMR (mismatch excision repair)
DNA ligase
Desac_2405
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desac_2405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF7409
Auto_anti-p27
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEB10226
UniProt:
F2NFV7
LinkDB
All DBs
Position
2669842..2671872
Genome browser
AA seq
676 aa
AA seq
DB search
MIDNARITIEIAARAARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEEYPELV
TPDSPTQRVGGGPAEKFESVTHRQPMLSLENAFSEGEVQEFEPRLKRFLHQQAEFDYVLE
PKMDGVAVNLTYEDGLLAIGATRGDGHRGENVTQNLRTIKTIPLVLRRETTPAPAFLEVR
GEVYIELAEFKKLNAAREAQGQPAFANPRNAAAGSLRQLDPAVTAGRPLKIYCYGIGEVA
GREFSSHWEVMQTLKTWGLRVNPYVDRCQGIEAAVAYHHRLEGLRHGLPYEIDGVVIKVD
SLELQTRLGIKSRSPRWALAYKFAATQATTQVRKIIVQVGRTGAVTPTAIMAPVEVGGVT
VSRATLHNEDEVARKDVREGDWVLIQRAGDVIPEVVKVITSRRTGREKPFKMPERCPVCD
TPLVRPQGEAVTRCPNPDCSAQLKRAIRHFASKGAMDIDGLGEKIIEQLIDQGLVQDVAD
LYRLQASDLLPLERFAEKSAQNIVQAIAGSKKPSLGRFIYALGIRYVGEATANLLARHFQ
TLNALKAAAVEDLLLIEGIGPQVAASIRDYFQNPKNQALLAKLLQANLQPQAATQVLTTP
LAGQTFVFTGRLQQLSRDEAKALVTAQGGKVSSSVSAKTDYLVVGKDPGTKYAQALELGL
TILDEAGFAQLIGRIT
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgatagataatgccaggataactatagaaatagcagccagagcagcccggttgcgggac
cagatccactaccacgactaccgttactatgtcctggacgacccggagatttctgatgcc
gaatatgacctactgttccgggagttggagcggctggaggaagagtatccggaactggtt
actcccgactccccgacgcagcgggtaggcggcggaccggcggaaaaatttgagtccgta
acgcaccgccagcccatgctgtcgttggaaaacgccttcagcgagggtgaggtgcaggaa
ttcgagccgcggcttaagaggttcttgcaccagcaggcggaattcgattacgtcctcgaa
cccaagatggacggcgtggcggtgaatctgacctacgaggacggtctccttgccatcggc
gctacccgcggagacggccatcggggtgaaaacgtcacccagaatctcaggaccattaag
accattcccctggtcttgcggcgggagacaaccccggcgccagccttcctagaggtgcga
ggcgaggtgtatatcgaactggccgaatttaaaaagctcaacgccgcccgcgaggcccag
gggcagccagcctttgccaacccccgcaacgccgccgccggatccctccggcagctcgat
ccggcagtaaccgccggtcgaccattgaaaatatattgctatggcataggggaagtagcc
ggacgcgagttctccagccattgggaagtcatgcagaccttaaaaacgtgggggctgcgg
gtgaacccgtatgtcgaccgttgccagggcattgaggcggccgttgcctatcaccatcgc
ctggaaggactgcgccacggattgccttatgagattgacggcgtggtcatcaaggtcgat
tccctggagttgcagactcgattagggatcaagagccgcagcccgaggtgggccctggcc
tataaattcgccgctactcaggcaactactcaggtacggaaaatcatcgtccaggtgggg
cgcaccggcgccgtcaccccgacggccatcatggcaccggtggaggtggggggcgtcacc
gtaagccgagccactttgcacaatgaagacgaagtagcccgcaaggacgtccgggagggc
gattgggtgttgattcagcgggccggagacgttatccctgaagtggtaaaggtaatcacc
agccggcgcaccggccgcgaaaagccattcaaaatgccggaaagatgcccggtatgcgat
actcctctggtgcgaccgcagggtgaggctgtaacccgctgtcccaacccggactgctcc
gcgcaactgaaacgcgccatccgccactttgccagcaaaggggcgatggatatcgacggc
ttgggggaaaagatcatcgagcagctcattgatcaaggattagtgcaggatgtggccgat
ctctaccgcctgcaggcgtctgacctgctacccctggagcgcttcgccgaaaaatcggcc
cagaatatcgtgcaggccattgccggcagcaaaaagccgtccctgggacgattcatctat
gccctggggatccgctatgtcggggaggccactgccaacctcctggcccgccatttccag
accctgaacgccctgaaggcggcggcggtggaagacctcctcctgatcgaaggcatcggt
ccccaggtggccgccagcattcgggactattttcaaaaccccaaaaaccaggctttattg
gccaaattactgcaggccaacctgcagccgcaggcagcaacccaagtcctgaccaccccc
ctggccggccagacctttgtcttcaccggcagactgcaacaactttcccgagatgaagcc
aaagccctggtgaccgcccaaggcggcaaggtcagcagctccgtctcagccaaaaccgat
tacctggtggtgggcaaagaccccggcactaaatacgcccaagcgctggagctgggcctg
actatcctggatgaggccggtttcgctcagttgatcgggaggataacatga
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