Deinococcus aquaticus: M8445_13335
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Entry
M8445_13335 CDS
T08867
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
daqu
Deinococcus aquaticus
Pathway
daqu03030
DNA replication
daqu03410
Base excision repair
daqu03420
Nucleotide excision repair
daqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
daqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M8445_13335 (ligA)
03410 Base excision repair
M8445_13335 (ligA)
03420 Nucleotide excision repair
M8445_13335 (ligA)
03430 Mismatch repair
M8445_13335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
daqu03032
]
M8445_13335 (ligA)
03400 DNA repair and recombination proteins [BR:
daqu03400
]
M8445_13335 (ligA)
Enzymes [BR:
daqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M8445_13335 (ligA)
DNA replication proteins [BR:
daqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M8445_13335 (ligA)
DNA repair and recombination proteins [BR:
daqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M8445_13335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M8445_13335 (ligA)
MMR (mismatch excision repair)
DNA ligase
M8445_13335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M8445_13335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WDA58317
UniProt:
A0ABY7UZI0
LinkDB
All DBs
Position
complement(2750747..2752822)
Genome browser
AA seq
691 aa
AA seq
DB search
MDQAAFDRYLALRAEVARHNRAYHEQDAPEIPDSEYDALARDLRALETENPDWAARAAEA
DGSELSPAQAVGGAPAGAFVPVNHPTPMTSLDNAFSDEELDDWREKLARALNLPADHDDF
TFTGELKIDGLSVNLYYLNGELQWAATRGNGVTGEIVTAQVATVPGIPTSLPGLSGELEV
RGEVYMSRADFAAFNEQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLRAIFYSLGRR
DGVPATTQGEVLAWLAAQGFPVSAYSETLRGVSAAADYHARMTAQRQTFEFDADGTVLKL
DPLRLQEETGFTSRAPRWAIAYKFPVEEVETTLEAITVNVGRTGKLAPLAHLAPRLIEGS
TVSRATLHNEDFIRDLDLHIGDTVVVRKSGGVIPQIMRVLHDKRPEGAQPFEFPTHCPEC
GHEVSRADGDANTYCPNPACPSQAFERIRYFVSRGAMDVRGIGEKLVAQLIDTGLVRDVS
DLYTLNAEQLAGLERGGDKKAQNILAQLDTSRTKPLWRLVNALGMNHVGERNAQALARAF
GTLDALLAATPEAIENVPGLGGVIAQSVTAALADPSMRGVIERLRAHGVTPAEEVTRRGE
QLSGLNFVITGTLTRPRDAIKAQLEAAGGRVTGSVTGKTSFLIAGEEAGSKLTRAQELGV
SVLTEAELADLLRDRGVTDAPDTDTPDTPTS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggctgcgtttgaccgttaccttgcgctgcgggccgaggtcgcccgccacaac
cgcgcgtaccacgagcaggacgccccggagatcccggacagcgagtacgacgcgctggcc
cgcgacctgcgcgccctggaaaccgagaaccccgactgggccgcccgcgccgccgaagcg
gacggcagcgagctgagccccgcgcaggccgtgggcggcgcgcccgccggggccttcgtg
ccggtgaaccaccccacgcccatgaccagcctcgacaacgccttcagcgacgaggaactg
gatgattggcgcgagaaactggcccgcgccctgaacctcccggccgaccacgacgacttc
accttcacgggcgaactgaaaatcgacggcctgagtgtcaacctgtactacctgaacggc
gaactccagtgggccgccacgcgcggcaacggcgtgaccggcgagatcgtgaccgcgcag
gtcgccaccgtgcccggcattcccaccagcctgcccggcctgagcggcgagctggaggtg
cgcggcgaagtgtacatgagccgcgcggacttcgcggccttcaacgagcaggccgaggaa
ctcggcacacccctgctgaaaaacccccgcaacggcgcggcgggcgcgctacggcagaag
gacccggaagtgacccgcacccgtaacctccgcgcgatcttctactcgctgggccggcgc
gacggcgtgcccgccaccacccagggcgaggtgctggcgtggctggctgcgcagggcttc
ccggtcagtgcgtacagcgagacgctgcgcggcgtgagcgccgccgccgactaccacgcc
cgcatgaccgcccagcgccagaccttcgagttcgacgcggacggcacggtcctgaaactg
gacccgctgcgcctgcaggaggaaacgggcttcaccagccgcgcgccccgctgggcgatc
gcgtacaagttcccggtcgaggaggtcgagacgaccctggaggccatcaccgtgaacgtg
ggccgcaccgggaaactcgcgccgctggcgcacctcgcgccgcgcctgatcgagggcagc
accgtcagccgcgccacgctgcacaacgaggacttcatccgcgacctcgacctgcacatc
ggggatacggtcgtggtccgcaagtccggcggcgtgatcccgcagatcatgcgcgtcctg
cacgacaaacgccccgagggcgcccagccctttgagttccccacccactgccccgagtgc
gggcacgaggtcagccgcgccgacggtgatgcgaacacctactgcccgaaccccgcctgc
ccctcgcaggccttcgaacgcatccggtacttcgtgtcgcgcggcgcgatggacgtgcgc
ggcatcggcgagaaactcgtcgcgcaactcatcgacaccggactggtgcgggacgtctcg
gacctgtacaccctgaacgccgagcagctggccggcctggagcgcggcggcgacaagaaa
gcgcagaacatcctcgcgcagctcgacaccagccgcacgaaaccgctgtggcgactcgtg
aacgcgctgggcatgaaccacgtgggcgaacgcaacgcgcaggcactggcccgcgccttc
ggcacgctggacgccctgctggccgccacgcctgaggccattgagaacgtgccgggactg
ggcggcgtgatcgcccagagcgtcacggcggccctggccgaccccagcatgcgcggcgtg
atcgagcggctgcgcgcccacggcgtcaccccggccgaggaggtcacccggcgcggcgag
cagctgagcggcctgaacttcgtgatcaccggcaccctgacccgcccgcgcgacgccatc
aaggcgcagctggaggccgccgggggccgcgtgaccggtagcgtcaccggcaagaccagt
ttcctgatcgccggggaagaggcgggcagcaaactgacccgcgcgcaggaactcggcgtg
agcgtcctgaccgaagccgaactggccgacctgctgcgtgaccgtggcgtgacggacgcg
ccggacacggacacgccggacacccccacttcctga
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