Desulforapulum autotrophicum: HRM2_28100
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Entry
HRM2_28100 CDS
T00861
Symbol
ligA1
Name
(GenBank) LigA1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03030
DNA replication
dat03410
Base excision repair
dat03420
Nucleotide excision repair
dat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRM2_28100 (ligA1)
03410 Base excision repair
HRM2_28100 (ligA1)
03420 Nucleotide excision repair
HRM2_28100 (ligA1)
03430 Mismatch repair
HRM2_28100 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dat03032
]
HRM2_28100 (ligA1)
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_28100 (ligA1)
Enzymes [BR:
dat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HRM2_28100 (ligA1)
DNA replication proteins [BR:
dat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HRM2_28100 (ligA1)
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HRM2_28100 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HRM2_28100 (ligA1)
MMR (mismatch excision repair)
DNA ligase
HRM2_28100 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HRM2_28100 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Mustang
Polysacc_deac_1
Motif
Other DBs
NCBI-ProteinID:
ACN15899
UniProt:
C0QJ86
LinkDB
All DBs
Position
complement(3194307..3196364)
Genome browser
AA seq
685 aa
AA seq
DB search
MIDPSSSFDRIKKEARLLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPELS
TPDSPTRRIGAKALTAFETAEHAIPMQSLDNAFSDQDVIDFHNRTAKILNTSDIRYTVEP
KLDGVAVELRYEQGSLTLALTRGDGTMGEVITDNARTIPSVPLKLAPAGNGTIPDVLEVR
GEVIINSKDFEGLNKKRLATGEPLFANPRNAAAGSLRQLDSRVTAKRPLEIFVYGVGRAQ
ELMANFDIGSHSALLESLKRLGFRINPLIRSGLSLTEVLDRFKAFETMRQDLDYEIDGMV
IKVDDIVFQERLGTKARSPRWAIAYKFPAMEETTVINDIIVQVGRTGTLTPVAILEPVNI
GGVMVARASLHNQDEIQNKDIRINDTVLVKRAGDVIPKVVKPVTALRTGSERVFVMPTHC
PVCHSPVRRLDNEAAVKCINASCKAQLKQRLKHFVSKGGFDMEGLGTKLIDQLVDRTLVG
SFADLFTLDRETLAAMDRMGEKSATNIVQAIERSKRIPLKRFLFALGMAHTGESAAQLLS
STFFTLEALLKASAEALGAIEGVGPKTADSVVAFFANPDNQETIARMMENGVVIENHTVV
ESAALDNATFFSEKRVVLTGTLGTLTRSEAKQRLEEQGARVVSSVSKNTDILVAGEASGS
KLVKARSLGVTIMDEQTFLEHLDRG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgattgacccatcatcatcgtttgacaggattaaaaaagaggcgcgcctgctccgggag
caactccatgtgcacaacattaactaccatgtaaaggatgatccggttatttcagatggt
gagtatgaccggatgatgcagcgcctcatcgccattgaaacccagtttcctgagctttcc
acaccagattcgcccacacggagaataggggcaaaggcgctgacggcttttgaaacggcc
gaacatgccatccccatgcagagtcttgacaacgccttttccgaccaggatgtgatcgat
ttccacaaccgcacagccaagatcttaaacaccagtgatatccgttataccgtggagccc
aaacttgacggtgtggctgttgagcttcggtatgaacagggtagccttacccttgccctg
acccggggggacggcaccatgggtgaagtgatcaccgataatgcaaggacaatcccatct
gtcccgttgaagcttgccccggctggaaatggaacaattccagatgtgcttgaggtgagg
ggagaggtgatcatcaattccaaggattttgaaggtctcaacaaaaagcgtctggcaacg
ggggagcccctgtttgctaaccccaggaatgccgcggcaggttcattgcgccagctcgat
tccagggttacagccaaaaggccccttgaaatttttgtctacggcgtggggcgtgcacag
gaattgatggcaaattttgacataggttcccattcggccctgctggagagtctaaaacgc
cttggatttcgaatcaatccgctgattcggtccggtctcagccttaccgaggtgcttgac
cggttcaaggcatttgaaaccatgcgccaggatcttgactatgagatcgacggcatggtc
atcaaggtcgatgatattgtctttcaagaacgccttggtacaaaagcacgcagtccccgc
tgggccattgcatacaagtttcccgccatggaagaaaccacggtgatcaacgatatcatt
gtccaggtgggtcggacaggaacacttacacccgtcgccatactcgaacctgtgaacatc
ggtggggtaatggtggcaagggcaagcctgcacaaccaggacgagattcagaacaaggat
atccggattaatgatactgtccttgtgaaaagggcaggggatgtaattcccaaggtggtc
aagcctgtgaccgcacttcggaccggatctgaacgtgtgtttgtcatgccgacccattgc
ccggtgtgccatagcccggtgcgtcgtcttgacaacgaggctgcggtaaaatgcatcaac
gcctcgtgcaaggcccagcttaagcagcggcttaagcactttgtctctaagggaggattt
gacatggaaggccttgggacaaaactcattgatcagcttgtggaccgaaccctggtgggg
tcgtttgccgatctgtttacccttgaccgggagacattggcggccatggatcgcatgggc
gaaaaatcggccacaaacattgtccaggccattgaacgctcaaaacgcatccccttgaaa
cggtttctctttgcccttggcatggcccataccggagaatctgcagcccagctcttgagc
agcaccttttttacccttgaggctctgctaaaggcaagtgcagaagccctgggtgccatc
gaaggggtcggacccaagaccgcagactcggtggtggctttttttgccaatccagacaat
caggagaccatcgcccggatgatggagaatggtgtggtcattgaaaaccacaccgttgtt
gaatccgctgccctggataatgccactttttttagtgaaaaacgggtggttctgactgga
acccttgggactttaacccggtccgaagccaaacaacggcttgaagagcaaggcgcccgg
gtggtgtcaagcgtcagcaaaaacacggacatccttgttgccggtgaagcttcgggcagc
aaacttgtcaaggcccgttcccttggcgtgaccatcatggatgaacagaccttccttgaa
caccttgacagagggtag
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integrated database retrieval system
