Desulfurella acetivorans: DESACE_04630
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Entry
DESACE_04630 CDS
T03007
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dav
Desulfurella acetivorans
Pathway
dav03030
DNA replication
dav03410
Base excision repair
dav03420
Nucleotide excision repair
dav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DESACE_04630
03410 Base excision repair
DESACE_04630
03420 Nucleotide excision repair
DESACE_04630
03430 Mismatch repair
DESACE_04630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dav03032
]
DESACE_04630
03400 DNA repair and recombination proteins [BR:
dav03400
]
DESACE_04630
Enzymes [BR:
dav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DESACE_04630
DNA replication proteins [BR:
dav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DESACE_04630
DNA repair and recombination proteins [BR:
dav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DESACE_04630
NER (nucleotide excision repair)
GGR (global genome repair) factors
DESACE_04630
MMR (mismatch excision repair)
DNA ligase
DESACE_04630
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DESACE_04630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
HHH_3
DNA_ligase_ZBD
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AHF97040
LinkDB
All DBs
Position
884634..886634
Genome browser
AA seq
666 aa
AA seq
DB search
MNEEEAKKRIEQLRRDINRHNYYYYVLNKPVISDSEYDMLMRELINLEKQYPQFFDENSP
TQKVGSDISEKFEKVEHKYRMYSLEDAFSEEEVIEFDKRIKRNLGIEEDIAYSVEPKFDG
VSVNIVYENGKLKVASTRGDGIIGEDITKNIKTIKNLPLILLVDNPPSFLDVQGEAILTK
EEFKKINEYREEMGLPLFANPRNAAAGSLKQLDPKETAKRNLKVFVYYIRGIENYKNPKT
QTQSLEILKELGLPVSELNRYCKNIYEAIDYRQTFLLARQNLPYEIDGMVFKVDDFLLQE
KLGYTSKYPKWAIAFKFPPMQSTTVVENIIFNVGRTGIVTPVAILKPVKIGGVTISRASL
HTFDELFKKDIRIGDHVFVQRAGDVIPEVVASIKEKRTGKEIQVKKPTNCPVCNSLLQEE
GAYLVCPNIDCRARIVESIKHFAQKNAMNIEGLGDKIIQQLVDKKIIESVSDIYNLDEDK
LLKLDRMGSKLAKKILENIQKSKRTTFARFLYALGIKHVGEFVASKLALNFKLEELIELK
NEEKLMQIDGIGPEIAQSVVNFFKEQRNVNTVKNLLKHISFIDTKSSAKLQNKTFVFTGA
LNIPRSKAKEMVENLGGIVKDNVSKDIDYLVVGEKAGSKLEKAKKFGITTISEEEFLKLV
GNESRD
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaagaagcaaaaaaaaggattgaacaattaaggcgggatattaaccgtcac
aattattattattatgtactaaacaaacctgtgatttctgatagtgaatacgacatgcta
atgagagagcttataaatttagaaaaacaatatccacaatttttcgatgaaaattcgcca
acacagaaagtaggctctgatatttcagaaaaatttgaaaaagttgaacacaagtacaga
atgtattctttagaagatgcttttagcgaagaagaagtaatagaatttgataaaagaata
aagcgtaatttaggaatagaagaagatatagcttatagtgttgaaccaaaatttgacggt
gtatcagtaaatatagtttatgaaaatggtaagctcaaagttgcttctacaagaggcgat
ggtataattggtgaagatataacaaaaaacataaaaacaataaaaaatttaccgcttatt
ttgcttgttgataatccacctagttttttagatgtccaaggtgaagctatattaacaaaa
gaagaatttaaaaagattaatgaatacagagaagaaatgggtttgccgctttttgcaaat
ccaagaaatgcagcagcaggttctctaaagcaattggacccaaaagaaactgctaaaaga
aacttaaaagtttttgtttattatattagaggtattgaaaattataaaaatcctaaaact
caaactcaaagtttagaaattttaaaagagcttggtcttccagtaagtgaacttaacagg
tactgtaagaatatttacgaagccatagactaccgtcaaacttttttgctggcaagacaa
aatctgccatatgaaatagatggtatggtttttaaagttgatgattttttgttgcaggaa
aaattgggttacaccagtaaatatccaaaatgggcaatagcttttaaatttcctccaatg
caatctaccacagttgttgaaaatataatttttaatgtaggaagaacagggattgttacg
ccagttgcaatcctaaaacctgtaaaaattggtggtgtaacaatatcaagggccagtctt
catactttcgatgaattgtttaaaaaagatataagaattggtgatcatgtgtttgttcaa
agagctggagatgtaataccagaagttgtagcaagcataaaagaaaaaagaactggcaaa
gaaatacaggttaaaaaacctacaaactgtcctgtatgtaattctttattacaagaagaa
ggcgcatatttggtgtgtccaaatatagattgcagggcacgtattgttgaatcaattaaa
cactttgcgcaaaaaaatgctatgaatatagaaggtcttggtgataaaattatacaacag
cttgtagacaaaaaaattattgaaagtgtaagcgatatttacaatcttgatgaagacaaa
ttattgaaattagatcggatgggctcaaagcttgcaaaaaagatacttgaaaatattcaa
aaaagtaaaagaacaacttttgctagatttttatatgcacttggcataaagcatgtggga
gaatttgtggcaagtaaacttgctcttaattttaaacttgaagagttaattgagctcaaa
aatgaggaaaaattgatgcaaatagatggaataggtccagaaatagctcaaagtgtggta
aatttttttaaagaacaaagaaacgtaaatactgttaaaaatctgcttaagcatattagc
tttattgatactaaaagttctgcaaaattgcaaaacaaaacatttgtatttactggcgct
ttaaatattccaagaagtaaagcaaaagaaatggtagaaaatcttggtggtatagttaaa
gataacgtatcaaaagacatagattatctggttgttggtgaaaaagccggtagtaagctt
gaaaaagctaaaaaatttggtattacaactataagtgaagaagagtttttaaagttggtt
ggaaatgaatcacgagattga
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