Candidatus Desulfofervidus auxilii: HS1_000310
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Entry
HS1_000310 CDS
T09963
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03030
DNA replication
daw03410
Base excision repair
daw03420
Nucleotide excision repair
daw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HS1_000310
03410 Base excision repair
HS1_000310
03420 Nucleotide excision repair
HS1_000310
03430 Mismatch repair
HS1_000310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
daw03032
]
HS1_000310
03400 DNA repair and recombination proteins [BR:
daw03400
]
HS1_000310
Enzymes [BR:
daw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HS1_000310
DNA replication proteins [BR:
daw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HS1_000310
DNA repair and recombination proteins [BR:
daw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HS1_000310
NER (nucleotide excision repair)
GGR (global genome repair) factors
HS1_000310
MMR (mismatch excision repair)
DNA ligase
HS1_000310
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HS1_000310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AMM40116
UniProt:
A0A7U4QIS7
LinkDB
All DBs
Position
297965..300112
Genome browser
AA seq
715 aa
AA seq
DB search
MYNQIQQKELLEKTKFFLNWLKNHPVKTLSLKEAEKIITNLREVIIYHDWRYYVLNDPVI
SDYEYDILFRYLRDMEKRYPKLITPDSPTQRVASELTKVFPEVPHLSKMLSLDNAYGAEE
LRDFHRRVTQGLGIDEVEYVCEPKFDGAGIALIYEGDYLKRGATRGDGARGEDITPNIKT
IHSIPLKAPFSQFGIHLLEIRGEVLIDKETFHKLNQKRLEEGLTPFANPRNAGAGSLRLQ
DPREVAQKNLVAFVYQITYAVNKKGETLLGSHLRSHWEVLNILHQCGFKVTREARLCHGI
EEVITFCQDWEGKREGFDYEIDGVVIKLNSIAYQQKLGETAHHPRWAIAFKFKPKQATTV
LKRVVFQVGRVGSITPVAELEPVEVGGVTISRVSLFNEDFIREKDIRAGDTILVERAGEV
IPYVVKVIKEARKGTEKPIIFPKTCPSCGSALVRLPDEAAWRCLNIRCPVQLMERLKHFA
SRRAMDIEGLGDRTARVLVVSGLVKDVGDIYFLNEEKLLKELPKRMEALGKPIPTFLGEL
NVKKLLKGISQSKIRPLHRVIYAIGIRYVGYTTATILAEMVNSIDDLINMPLEDLELAPG
IGPKIAHSIKEFFNLPENIKVIEKLKKAGVRMAKLEMAGPLAGKVFVFTGALSTMSRDEA
KSKVEALGGKSGDTVSKKINYVVVGKNPGSKLEKAKRLGLKIITEQEFLEMIKER
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtataaccaaattcaacagaaagaattgctggagaagacaaaattttttttaaattgg
ttaaaaaatcatcccgtaaagaccctctctctaaaagaagcagaaaaaattataactaat
ctgcgagaggtaattatttatcacgattggcggtattatgtattaaacgacccggttatt
tctgattatgaatatgatattttgtttcgctatttgcgggatatggaaaaaaggtatccc
aaacttattactcctgactctcctacccaaagagtggctagtgaacttaccaaagtcttt
ccagaagtgcctcatctttctaagatgctttctttagacaatgcttatggtgcagaagaa
ttaagagattttcataggcgggtaactcaaggcctgggtatagatgaagtagaatatgtt
tgtgaacccaagtttgatggggcaggtattgctttaatttatgaaggtgattatttaaag
cgaggtgcaacccgtggtgatggtgccaggggtgaagatattactcccaatatcaagact
atccattccatcccccttaaggcccctttttcccaatttggcatccatcttttggaaata
aggggcgaggtgttaattgataaagagacctttcataagttaaaccaaaaaaggttggaa
gaaggtttaacgccctttgccaatcctcgcaatgctggtgctggctctttaagactccag
gacccaagggaagtggcccaaaaaaacttggtggcctttgtttatcaaattacttatgct
gtaaataaaaaaggagagactctcttgggtagtcatttgaggtctcactgggaagtttta
aacatcttgcatcaatgtggatttaaggttacccgcgaggctcggttatgccatggcata
gaagaagttatcactttttgccaggattgggaaggaaagcgagaaggatttgactatgaa
atagatggagtagtaattaagctcaactctattgcttatcagcaaaaacttggtgaaact
gctcatcaccctcgttgggcaattgcctttaagtttaagcctaaacaagcaactactgtt
ttaaaaagagtggtttttcaggtaggtagagtggggtccatcacgcctgtagcagaactt
gaaccggtggaggtaggaggagtgaccataagccgagtttccctttttaatgaagatttt
atcagagaaaaggatattagagcaggtgatactatattagtagaacgagcaggtgaggtt
attccttatgtggttaaggtgattaaagaggcgcgtaaaggaacagaaaaacccattatt
tttcccaagacttgcccttcttgtggtagtgctctggtgcgtttgcctgatgaggctgcc
tggcggtgtctaaatatccgttgtcctgttcaattaatggagagattgaagcactttgct
tccagacgagccatggatattgaaggactgggagataggaccgctcgggtattggtggtt
agtgggttagtaaaggacgtaggggatatttattttcttaatgaagaaaaactactaaaa
gaactccctaaacgcatggaggccttagggaagcctattcccacttttttaggagaactg
aatgtaaaaaaattacttaaaggcatttcccaaagtaaaataagaccccttcaccgcgtg
atttacgctattggtatccgttatgtaggttataccacggctaccattttagcagaaatg
gtgaattctattgatgaccttataaacatgcccttagaagacttggaactggctccaggt
ataggtcctaaaattgctcatagtattaaagaattctttaacctaccagaaaacattaag
gtgatagaaaaattaaaaaaggctggtgtgcgaatggccaagctagagatggccgggcct
ttagcaggcaaagtgtttgtgtttactggtgcactcagcactatgagcagggacgaagcc
aaaagtaaggtagaggcgttgggtggaaaatctggggatacagtgagtaagaaaataaat
tatgtagtggtaggaaaaaacccaggctcaaaattggaaaaggcaaaacgcctaggatta
aaaattataacagaacaagagtttttagaaatgataaaagaaaggtaa
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