Metallumcola ferriviriculae: MFMK1_003301
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Entry
MFMK1_003301 CDS
T10258
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dbc Metallumcola ferriviriculae
Pathway
dbc03030
DNA replication
dbc03410
Base excision repair
dbc03420
Nucleotide excision repair
dbc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MFMK1_003301 (ligA)
03410 Base excision repair
MFMK1_003301 (ligA)
03420 Nucleotide excision repair
MFMK1_003301 (ligA)
03430 Mismatch repair
MFMK1_003301 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dbc03032
]
MFMK1_003301 (ligA)
03400 DNA repair and recombination proteins [BR:
dbc03400
]
MFMK1_003301 (ligA)
Enzymes [BR:
dbc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MFMK1_003301 (ligA)
DNA replication proteins [BR:
dbc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MFMK1_003301 (ligA)
DNA repair and recombination proteins [BR:
dbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MFMK1_003301 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MFMK1_003301 (ligA)
MMR (mismatch excision repair)
DNA ligase
MFMK1_003301 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MFMK1_003301 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
DNA_ligase_A_M
HHH_3
RNA_pol_A_CTD
HHH_8
Zn_ribbon_NUD
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
WRO23441
UniProt:
A0AAU0UQQ0
LinkDB
All DBs
Position
complement(3393575..3395575)
Genome browser
AA seq
666 aa
AA seq
DB search
MSSASIENKIKQLRDELEDHNYQYYVLDQPTITDREYDDKLRELQQLEEEHPESQDPHSP
TQRVGGAPREGFTTVNHPIPLLSLDNAFGEEELYQWHRRVEKLAGEAVTYIVELKIDGLS
VALTYDDGRLVVGATRGDGEIGEDITANIKTIQSVPLKLRRQVQRLLVRGEAYMPRPAFI
KLNKKRQEADEALFANPRNAAAGSLRQLDPKVAAQRNLQVFVYDILAVDGEELTTHDQAL
ALLQELGFVVNSHHKLCHTIEEVYRYCLEWTEKREQLPYDIDGLVVKVNQLELHEAIGRT
AKNPRWAIAYKFPAEQKESMVQDVFLRIGRTGVVTPTALLAPVQLAGTTVTKATLHNEDF
IRDKDIRIGDAVIVRKAGDIIPEVVQVLPERRKGSEGEFKFPQYCPECGAHLKRADNEAA
IRCQGGLACGAQVREGIIHFTSRNAMDIEGLGSKMVEQLLDAGLIKNIADLYYLRLEELL
ELQRVGNKSAQNLLDAIEKSKDNPLHQLIFALGIRHVGLGAAKVLSKQFHSLDNLAQAGV
EELTAVSDIGPKMAESIVDFFQEERNQDVIGRLKTAGVNTQADQGTQGGELEGLTFVITG
SIPGYSRKDVQDLIESRGGKAAAAVSRKTDYVLAGEDPGLKAEKARTLGVPVLQVEDLLK
TLNGIT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
ttgagtagtgcaagcatagaaaataaaattaagcaattacgtgatgagttggaggatcat
aattaccaatactatgtattggaccaaccgacaattacggaccgagaatatgatgacaaa
ctgagggaactgcagcaattagaggaagaacatcccgagtcccaggacccgcattcgccc
acccagcgagttgggggcgctcctagggaaggatttaccacggtaaatcatccaatacct
ttgcttagcttagacaatgcctttggggaagaggaattgtaccaatggcaccggcgagta
gagaagttagccggagaagctgttacgtatatagtagagcttaaaattgacggtctctct
gtggccctcacttatgatgatggcagattagttgtcggtgctaccagaggcgatggcgaa
ataggggaagatattacggccaacatcaagacaatacagtctgtaccgctgaaattgcga
cggcaggtgcagcgcttattggttcgtggcgaagcatatatgcccagaccggcatttatc
aagcttaacaaaaagcggcaggaggcagatgaggcgttattcgccaatccccgtaatgca
gccgccgggtccttaaggcagctggaccccaaggtggctgctcagcgaaatctgcaggta
tttgtctacgacattttagcagtggacggggaagaactgactacccatgaccaggcactt
gctctcttgcaggaattaggttttgttgttaattcccatcataaactctgtcacactatt
gaagaggtctaccgttactgtctggaatggacagagaagcgggagcagcttccatatgat
attgatggtttggtggtaaaggttaatcagttagagcttcatgaagcaatagggcgtacc
gctaaaaatccacgttgggcaattgcctacaagttccctgctgaacagaaggaaagtatg
gtacaggatgtttttctgagaataggccgcaccggggtggtgacacccactgccttactg
gcgccggtacaattggcaggcactaccgttaccaaggcaacccttcataatgaagacttt
attcgtgataaggatattcgcattggtgacgcggtaatagtgaggaaagccggggatata
attcccgaagtagtacaggtattacctgagaggcgaaaaggaagtgagggtgaatttaag
tttccccagtactgccctgaatgtggcgcgcacttaaaacgggcggataatgaagcggcg
attcgctgtcagggaggtttggcctgtggtgctcaggtcagggaaggaataattcacttc
acctctcgtaatgccatggacattgaagggttaggatcgaagatggtggaacagctcctt
gatgccggtctgataaagaacattgccgacctatattatcttaggctggaagaactgctg
gagcttcaacgcgtaggaaacaaatcagcccaaaacctccttgatgctattgaaaaaagt
aaggataacccactacatcaattaatatttgctttgggcatccggcatgtgggactgggt
gctgcaaaggtattgtccaaacaattccattcgctggacaatttggctcaggccggggta
gaggaactcaccgccgttagcgatatcggcccgaaaatggcagaaagcattgtcgatttt
ttccaagaagagagaaaccaagacgttattggacgactaaaaaccgccggggtaaatacc
caggctgaccaaggtacacaagggggagagcttgaaggattgaccttcgttatcacaggc
agcattcccggctacagccgaaaagacgtccaggacctaatagaatcccgtggcggaaaa
gctgccgccgcagttagccgcaaaaccgattatgtactagccggcgaagatccaggttta
aaagcagaaaaagcccgaactttgggcgtgccggtattgcaagttgaagatttgctaaaa
acactgaacggaataacttga
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