Desulfotomaculum nigrificans: Desca_1736
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Entry
Desca_1736 CDS
T01498
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03030
DNA replication
dca03410
Base excision repair
dca03420
Nucleotide excision repair
dca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Desca_1736
03410 Base excision repair
Desca_1736
03420 Nucleotide excision repair
Desca_1736
03430 Mismatch repair
Desca_1736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dca03032
]
Desca_1736
03400 DNA repair and recombination proteins [BR:
dca03400
]
Desca_1736
Enzymes [BR:
dca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Desca_1736
DNA replication proteins [BR:
dca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Desca_1736
DNA repair and recombination proteins [BR:
dca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Desca_1736
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desca_1736
MMR (mismatch excision repair)
DNA ligase
Desca_1736
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desca_1736
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
HHH_3
MJ0401
Motif
Other DBs
NCBI-ProteinID:
AEF94584
UniProt:
F6B7U7
LinkDB
All DBs
Position
complement(1860130..1862139)
Genome browser
AA seq
669 aa
AA seq
DB search
MSAVTPEIKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELVTPD
SPTQRVGGEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNLPGEEVEYVLELKID
GLAISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIPFLEVRGEAYMPKE
SFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLEGANPGTHA
RLLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVNSLDQQQRL
GATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLHN
EDIIRQKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKPFTMPSTCPECNAPVVRLPG
EAAHRCTNKNCPAISREGIIHFVSRGAMDIMGLGESIVNQLIMAGLVQDPADLYDLKYED
LIKLDRMGARSSRNLLNAIAASKHNSLAQLLVALGIRHVGERAAKILARHFGSMSALMAA
TVEDLTVIPEIGPKIAESIVDYFARPENKTLIQRLDRAGVNMEEANQQAEPGQQPLAGKT
FVITGTLEGFSRQEAQRAIEELGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIPILNE
QEFVALLKQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgcggttactccggaaattaaggcccgggtggaagaactgcgccgggagattaac
tatcataaccaccagtactatgtcctggataaccccaccatcaccgatggtcaatatgac
caattggtgcaggaattgctgcggttggaaaatgcctacccggagttggtgacacctgat
tcaccaacccagcgggtcgggggtgaaatccagaagggtttcacggctgtgcagcaccgg
gtacccatgctcagtttgagcaacgcctttagcgaaaatgatttaagagaatttgaccgg
cgggtgcgcagtaatttaccaggtgaagaggttgaatatgtactggagttaaaaatagat
ggtttagccatttccctctggtatgaacagggtgtttttgtgcggggtgctaccagagga
gacggtgaactgggtgaggacattaccgccaacctgcgtaccatcaaggctatcccgttg
cgcataaaggagtcaattccttttctggaagtacggggggaggcctatatgcccaaggaa
tcctttgtccggcttaacgaggccagggaagaggccggtgaaccactctttgccaaccca
cgcaacgcggcggcggggagtttgcggcaactggaccccagggtcactgcctcccgtaat
ctcagcgtctttatgtacgccattggccatttggagggggccaaccctggcacccatgcc
aggttgttaggctggttaaaggatttgggatttagagtgaaccagcactataagttatgt
aaagatattgaagaggttattaggcaaatcgacaaatggcaggagcagcggtttgagctg
ccctatgccattgacgggctggtgatcaaagttaactctttggatcaacagcagcggtta
ggggccactttaaaaagtccccgctgggccattgcctacaagtttccggccgagcaggct
gtcagtaccatcaaagatattatcatccgggtgggccgtaccggcgtgctgacccctacg
gccatattggagccggtgcaactggccgggactactgtaagtaaagccactttacataac
gaagatattatccggcaaaaggacattcgcattggtgatcaagccctggtgcaaaaggcc
ggggatatcataccggaagtggtgctggtgtttccggagcggcgcaccggccaggagaaa
ccctttaccatgcccagcacctgtcccgagtgtaatgccccggtggtgaggctgccgggt
gaagcggcccaccgttgtaccaataaaaactgcccggctatctcccgagaaggaatcatc
cactttgtttcccggggagccatggatattatgggcctgggcgaaagcatagtaaaccag
ttaatcatggccggactggtgcaggatccggcggatctctatgatttaaagtatgaggat
ttaattaagttagaccgcatgggggcccgttcctcccggaacctgctgaatgccattgcg
gccagtaagcataactccctggcccaactgctggtggccctgggcattagacacgtgggt
gaacgggcggccaaaatcctggccagacattttggttctatgtcagctttgatggctgcc
acagtggaagatttgaccgtcattcctgagattgggcccaagatagcggaaagcatagtg
gattattttgcccgaccggaaaataaaaccctgattcaacgcctggaccgggccggtgtt
aatatggaggaagcaaatcaacaggctgaaccggggcaacaacccctggccggcaaaacc
tttgtgatcaccggtaccctggagggattttcccgccaggaagcccagcgggccattgaa
gagttagggggcaaagtatccggcagtgtaagcaagaagaccgattatgtggtggtggga
gagaaccccggctccaagtatgacaaggcgcaacaactgggcattcccattttgaatgag
caggagtttgtagctttactaaaacaataa
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