KEGG   Solidesulfovibrio carbinolicus: C3Y92_11380
Entry
C3Y92_11380       CDS       T06503                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dcb  Solidesulfovibrio carbinolicus
Pathway
dcb03030  DNA replication
dcb03410  Base excision repair
dcb03420  Nucleotide excision repair
dcb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dcb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C3Y92_11380
   03410 Base excision repair
    C3Y92_11380
   03420 Nucleotide excision repair
    C3Y92_11380
   03430 Mismatch repair
    C3Y92_11380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dcb03032]
    C3Y92_11380
   03400 DNA repair and recombination proteins [BR:dcb03400]
    C3Y92_11380
Enzymes [BR:dcb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C3Y92_11380
DNA replication proteins [BR:dcb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C3Y92_11380
DNA repair and recombination proteins [BR:dcb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C3Y92_11380
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C3Y92_11380
   MMR (mismatch excision repair)
    DNA ligase
     C3Y92_11380
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C3Y92_11380
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH BRCT_2 HHH_8 E1-E2_ATPase MutL
Other DBs
NCBI-ProteinID: QAZ69504
UniProt: A0A4P6HS16
LinkDB
Position
complement(2585922..2588027)
AA seq 701 aa
MSTIDPAVRLRELRDLIHEYDYRYYVLDDPTVEDAAYDALYRELKALEEAHPELADPNSP
TRRVGGAVLDGFASRPHRLRMYSLDNAMVEEEWRDFVTRAANKLERDGVAFDAPTFWVDP
KFDGLALEIIYENGVYAGALTRGDGEVGEDVTENVRTVRNVPLDLRPHAARAGLPVPRLL
EVRGEVVMTRQDFYELNERQREQGGKVFANPRNAAAGSVRQLDSRISATRPLTFFTYAVG
SQDWGDGLAGPGWATHGAVMAGLKALGLPLAGQGKVVAADEVYPYFEAMGRQRQELPFEI
DGVVVKVDSLALQEALGFTDRAPRFAVALKFPAHEAETVLKHIDVQVGRTGVLTPVAILE
PVSLAGVTVARATLHNEDEIKAKDLRPGDTVVVRRAGDVIPEVVRVVEDKRPAEAAPYDF
PHVCPSCGSDAVRGEGEAAWRCVNLACPAMLRRGISYFVSKSGLDIEGLGAKWVSALIDK
GMVKSPADLFDLTEADLLPLERMAEKSAANFVAAVAAARQSASLVRLIAALGIRQVGTRT
ARTLAGHFHDLDALGAATAEELTALPDIGPEVAGSIREFFANEANRELLARFKGIGLWPV
GEAKPDRPAVQTALTGKRFLFTGALPDLTREAAQKLVEAAGGVVVGSVSKKLDYLVAGAD
PGSKLAKAQALGITILSPEAFAALLGGLTRETATRKSLLDV
NT seq 2106 nt   +upstreamnt  +downstreamnt
gtgagcaccattgatcccgccgtgcgtctgcgcgaactgcgcgacctgatccacgaatac
gactaccgctactacgtcctggacgaccccacggtggaggacgcggcctacgacgccctg
tatagggaactgaaggcgttggaagaagcccatcccgagctggcggatcccaattcgccc
acgcgccgggtgggcggggcggtgctggacggcttcgcctcccggccccatcggctgcgc
atgtacagcctggacaatgccatggtggaggaggaatggcgggacttcgtgacccgggcg
gccaacaagctggagcgcgacggcgtggccttcgacgccccgacgttttgggttgatccc
aagtttgacgggctggccctggagatcatttacgaaaacggcgtctatgccggggcgctc
acacgcggcgacggcgaggtgggcgaggatgtgacggaaaacgtgcgcacggtgcgcaac
gtccccctggacctgcgtccccatgccgctcgggccgggctgcccgtgccgcgcttgctg
gaggtgcgcggcgaggtggtcatgacccggcaggatttctacgaactcaacgaacgccag
cgggagcaggggggcaaggtctttgccaatccccgcaacgccgccgccggctcggtgcgc
cagcttgattcgcgcatctcggccacccggcccctgacgtttttcacctacgccgtgggc
agccaggactggggcgacggtctggccggaccgggctgggccacacacggcgcggtcatg
gccggacttaaggccctgggcctgcccttggccggccagggcaaggtggtggcggccgac
gaggtctatccctatttcgaggccatgggccgacagcgccaggagttgcccttcgagatc
gacggggtggtggtcaaggtggacagcctggccttgcaggaggccttgggctttaccgac
cgcgctccgcgctttgccgtggcgctcaaatttccggcccacgaggccgagaccgtgctc
aaacatattgacgttcaggtgggccgcaccggcgtgctgacgcctgtcgccatcctggag
ccggtcagtctggccggggtgacggtggcccgggccacgctgcacaacgaggacgagatc
aaggccaaggacctgcggccgggcgatacggtggtggtgcgccgggccggcgacgtcatc
ccggaagtggtgcgggtggtggaggacaagcgtccggccgaggccgcgccttacgacttc
ccccatgtctgcccgtcgtgcggatcggacgccgttcggggcgagggcgaggcggcctgg
cgctgcgtcaacctggcttgcccggccatgctgcgccggggcatcagctatttcgtgtcc
aagtccggcctggacatcgagggcctgggggccaagtgggtgtcggcgctcatcgacaag
ggcatggtcaaaagcccggccgatctgttcgacctgaccgaggcggacctgctcccctta
gagcgcatggccgagaagtcggccgccaatttcgtggccgccgtggccgcagccaggcaa
tcggccagcctggtcaggctcatcgcggccctgggcatccggcaggtgggcacgcgcacg
gcccggaccctggccgggcatttccacgacctggacgccctgggcgcggccacggccgag
gaactcacggccctgcccgacatcggcccggaagtggccggctccattcgggaatttttt
gccaacgaagccaaccgggaactgctggcccggttcaaggggatcggcttgtggccggtg
ggcgaggccaagccggacaggccggccgtccagacggcgctgaccggcaagcggtttctt
tttaccggcgcgctgccggacctgacccgcgaggcggcccaaaagctggtggaggcggcc
ggcggcgtcgtggtcggctcggtgtccaagaaactcgactatctggtggccggggccgat
cccggctccaagctggccaaagcgcaagccctgggcatcacgatcctgtcgcccgaggcc
tttgccgccctgctcggcggcctgacccgggagaccgccacccgcaaatccctcctcgac
gtctaa

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