Dermochelys coriacea (leatherback sea turtle): 119856319
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Entry
119856319 CDS
T09064
Symbol
DDX58
Name
(RefSeq) LOW QUALITY PROTEIN: antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04622
RIG-I-like receptor signaling pathway
dcc04623
Cytosolic DNA-sensing pathway
dcc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
119856319 (DDX58)
04623 Cytosolic DNA-sensing pathway
119856319 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119856319 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
dcc04054
]
119856319 (DDX58)
Enzymes [BR:
dcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119856319 (DDX58)
Pattern recognition receptors [BR:
dcc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
119856319 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
ResIII
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
119856319
NCBI-ProteinID:
XP_043371407
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All DBs
Position
5:complement(120484968..120515692)
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AA seq
863 aa
AA seq
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MTTEQKAGLRCYRPYIEKTLNPAYMLGNMKEWLSDGEMLRIQTEEQKKGLTAAXALLVDS
LLQLESEGWFRGFLDALNAAGYTGLREAIENWDFQKLESLEVHRQLLKHTEATMREIDAE
QIIPFLNTSLMEQECEEILQVKELKGRMAGAVKLIEWLSRSDEENWPETFHLALERARYD
PTSKLWNMKSGNNKEMDVEMMEDQNGNSSALDINVQYSKEAEVDNFSESPCSPSEVSQQP
TYGPKKPRSYQIELTRPAVSGEKYNRSGKTFVALLICDNHFQNMPKEQKGKIVFLATKVP
VYVQQKKVFTQHFKRTRYKVAEIAGDVSXSIIEGNDIVLTPQILVNGLKDRTVPSLAIFT
LIIIXECHNTNGNRPYNVLRFKXLVIKFDSAAEQLPQIVGLTASGMGSAKTLKEMKEYIC
TLCACFDISPIYXSENTQELEEIVYRPKKFFRLVGKCPQNHFMDIISVLMSETEALASKI
YPIDAFSHIKCFGTQCYEQWIVDIXKKCRMLQLPDKDXCRALFIYTERLRKYNDSLINKD
ARTQXCVAYLTEFFXDLRSGGFEIDQQLTANFEAKQELREASEDELNENPKLEELTFILN
EEYCLKPQTCTLXFVTTRALVSALKKWIDENPTLSYLKLDTLIGRSKRNXQTGMTLSNQK
GILDLLKTNSNSKILPTAVAEEGIDIAQCNQLLLYEDSGNVTKMIQVYSFIKGLPVTHMS
WKQKTASASKSEVAENERNNKEEMMNKAVEQLQEWDEETFARKVGPLAAILHGPNPNRRT
FSKPLQKPSCYENFEKKCXCWDSKCQHDWGITARYKTFDDFPVIKIESFVVKNVTTGKXV
FQKWRDVDFAMREFDINEMSSTE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagagcagaaagcgggcctgcggtgctaccggccgtacattgagaagaccctg
aatcctgcctatatgctgggcaacatgaaggaatggctctctgatggggagatgctgaga
attcagactgaagaacagaagaaggggctgactgctgctngtgcactccttgttgactct
ctactacagctcgaatcggaaggatggtttcggggatttctagatgcactgaatgcagca
ggttacacaggtctgagagaagcaattgaaaactgggatttccaaaaacttgaaagcctg
gaagtgcatcgacagctgctgaaacatacagaagctacaatgagagaaattgatgcagaa
cagataattcctttcttaaacacttctctcatggaacaagaatgtgaagagattctgcag
gtcaaagaactgaaaggcagaatggctggtgcagtaaagctcattgaatggctttctagg
tctgatgaggaaaactggcctgaaacttttcatctagctctagaacgagcacgatatgac
ccaacaagcaaactgtggaatatgaaatcaggtaacaataaagagatggatgttgaaatg
atggaggaccagaatgggaacagtagtgccttagatataaacgtacagtattccaaagaa
gcagaagttgacaatttcagtgaaagtccgtgttctccttcagaagtttctcaacaacct
acttatggaccaaagaagcctagaagttatcagattgagcttacccggcctgctgtcagt
ggggaaaaatacaatcgatctggtaaaacctttgtggcacttctgatttgtgacaatcat
ttccaaaacatgcccaaggagcagaaggggaagattgtctttctagctactaaagttcca
gtatatgtacaacagaaaaaagtcttcacgcaacacttcaaaagaactaggtacaaagtt
gcagagattgctggggatgtctccnnaagtattattgaagggaatgatattgtcttgaca
cctcagatccttgtgaatggcctcaaagacagaactgttccttcccttgccattttcact
ttgattataattnntgagtgccacaacaccaatgggaatcgcccctataatgtgttaagg
ttcaagtagttggtcattaaatttgactccgctgcagaacagctgcctcagattgttggc
ttaacagcctctggcatgggcagtgccaagaccctcaaggagatgaaagaatacatctgt
accctctgcgcctgctttgacataagtcctatctacncatcagagaacacacaggaactg
gaggagattgtatacaggcccaaaaaatttttcagactagtcgggaagtgcccccaaaac
cactttatggacattatctccgtcctgatgtctgagactgaggccctggcaagcaagatt
tacccaatagatgcattttcccacattaaatgttttggaacgcaatgctatgaacagtgg
atcgttgacatttgaaagaagtgcagaatgttgcaactgccagataaggatnnttgtaga
gctctttttatttacactgaacgcttacgcaaatacaatgactccctcatcaacaaagat
gcacggactcagntatgcgtggcctacttgactgaatttttcnaagaccttagaagtgga
gggtttgagatagatcaacagttaacagcaaactttgaagctaaacaggaactgagagag
gcctcggaagatgaactgaatgagaatcccaaactggaggagctcaccttcatcctgaat
gaagaatactgcctaaagccacagacctgcacccttnnctttgttaccacaagagctcta
gtgtctgccttgaagaaatggattgatgaaaatcctacactcagctacctaaaactggat
acattgatagggcgtagcaaaagaaactagcaaacaggtatgacactctcaaatcaaaag
ggcatactggacttactcaaaaccaacagtaacagtaaaatactacctacagctgttgct
gaggaagggattgatattgctcagtgcaaccagcttctcctctatgaagactctggcaat
gtcaccaaaatgatccaagtctacagtttcataaaagggcttcctgtcactcacatgtca
tggaagcaaaagacagcaagtgcaagcaaaagcgaagtggctgagaatgagagaaacaat
aaggaggagatgatgaacaaagccgttgagcagctgcaggagtgggatgaggaaaccttt
gcaaggaaggtgggtccactcgctgccattctgcatggtccaaatccaaacagacgaaca
ttttctaagcctctccaaaaaccaagctgctatgaaaactttgagaagaaatgtnactgc
tgggactccaagtgccagcatgactggggaatcacagcgaggtacaagacatttgatgac
ttcccagtgatcaaaattgaaagctttgtggtgaagaatgtcacaactgggaaanctgtt
ttccagaaatggagggatgtggattttgcaatgagggaatttgacattaatgaaatgtcc
agtacagagtga
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