Dolichospermum compactum: NIES806_30350
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Entry
NIES806_30350 CDS
T10125
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dcm Dolichospermum compactum
Pathway
dcm03030
DNA replication
dcm03410
Base excision repair
dcm03420
Nucleotide excision repair
dcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIES806_30350
03410 Base excision repair
NIES806_30350
03420 Nucleotide excision repair
NIES806_30350
03430 Mismatch repair
NIES806_30350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dcm03032
]
NIES806_30350
03400 DNA repair and recombination proteins [BR:
dcm03400
]
NIES806_30350
Enzymes [BR:
dcm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIES806_30350
DNA replication proteins [BR:
dcm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIES806_30350
DNA repair and recombination proteins [BR:
dcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIES806_30350
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES806_30350
MMR (mismatch excision repair)
DNA ligase
NIES806_30350
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES806_30350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
TP_methylase
RCDG1
Flu_PB2_1st
Motif
Other DBs
NCBI-ProteinID:
BAZ86819
UniProt:
A0A1Z4V651
LinkDB
All DBs
Position
complement(3200889..3202931)
Genome browser
AA seq
680 aa
AA seq
DB search
MSTQPEVKRIEELRRLLQQAGYAYYVLDAPIMEDTVYDRLYRELQELETQNPELITPDSP
TQRVGDRPATHFTSVRHNIPLYSLENAFNIEELQSWDQRWRRYSPIQYNNVELEYVSELK
IDGAALALTYENGFLVRGTTRGDGVMGEDITQNVRTIRSIPLRLNFDGLENIAKVEVRGE
AFLPLQVFKEINEKRQKAGEQLFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTLHITGLD
DSSIANTQWEALELLQKMGFRVDTNHKLCHSIAEVAEYYQYWDTERLNSPYMTDGVVVKL
NTFRLQEQLGFTQKFPRWAIALKYPAEEAPTRVEKITVNVGRTGALTPLAEMLPVQLAGT
TVSRATLHNSDRIEQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPFIMPSHCPVC
GQQVVRETGEAVTRCVNSSCAAILKGEVEHWVSRDALDIKGVGEKLVYQLVDKGFVHSIA
DLYELKTDKLCALERMGQKSAEKLVKAIAQSKTQPWSRVLYGLGIRHVGSVNAQLLTEKF
TTVEELTAARQSDIAGVYGIGAEIAQSVYQWFRTPANQTLISRIQTIGLQLANSTETKAV
EKINQNFAGKTFVVTGTLPTLKRDEAKALIQKAGGKITDSVSKKTDFLVVGADAGSKLEK
AQNLGISQLTEAQLLTMLAE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactcagccggaagtaaaacgtatagaagagttacgaagattgttgcaacaagct
ggctatgcctattatgttttagatgcgccaattatggaagatactgtatatgatcggctg
tatcgagagttgcaagaattagaaacgcaaaatcccgaattaattactcccgatagtcca
actcagcgtgttggcgatcgccctgccacccattttacttcagtccgtcataatattcct
ctatatagcctggaaaatgctttcaatattgaagaattgcaaagttgggatcagcgttgg
cggcgatactcacccattcagtataataacgtagaactggaatatgtatctgagttaaaa
attgatggtgcagccttggctttaacttacgaaaatggttttttagtcagggggacaacg
cgaggagatggggtcatgggtgaggacattacccaaaatgtcaggactattcgctcaatt
cccctgcgtttgaattttgacggtttagaaaatattgctaaagtcgaagtccgaggagaa
gcattcctaccgctacaggtatttaaggaaattaatgagaagagacaaaaagctggggaa
caattgttcgctaatccgcgtaatgctgtggcgggtacgctcagacaattagattcacgg
attgtagcacagcgacagttagatttctttgcttatactctgcatattacaggtttggat
gattctagtattgcgaatactcaatgggaagctttggaattgttgcaaaaaatgggtttt
cgagtggataccaatcataaactttgccattctattgctgaagttgctgaatattaccaa
tattgggatacagaacggctgaattctccctatatgacggatggtgttgtcgttaaatta
aatacatttagactccaagaacaattagggtttacacagaagtttccccgctgggctata
gccttaaaatatccggcggaagaagccccgacccgtgtagaaaaaattactgtcaatgtt
ggcagaactggggcattaactcctctagcagaaatgttgcccgtacaattagcaggaaca
actgtttcccgtgctaccttacataatagcgatcgcatcgagcaattagatatccgcatt
ggcgacaccgtgattgttcgcaaagccggagaaatcattcccgaagtcgtccgggtcatc
aaagaactacgtcccgctgacactcaacctttcattatgccttcccattgtcccgtctgt
ggtcaacaggtagtcagagaaacgggcgaagctgttactagatgtgtaaattcttcctgt
gcggcgattcttaaaggtgaggttgaacattgggtcagtcgtgacgctttagatattaaa
ggtgtgggggagaagttggtgtatcaacttgtagacaagggctttgtacattccattgct
gatttatatgaattaaagacagataaattatgtgcattagaacgcatgggacaaaaatct
gcggaaaaattggtgaaggcgatcgctcaatcaaaaacccaaccctggtctagagtatta
tatggtttaggcatccgtcacgttggcagcgtcaacgcccaattactcaccgagaagttt
accaccgttgaagagttaacagccgccagacaatcagatattgcaggcgtttatggtatc
ggtgcagaaatcgcccaatcagtctatcaatggtttcgcaccccagccaatcaaacctta
atctcccggattcagaccattggcttacaattagccaacagcaccgaaaccaaagcagta
gagaaaattaatcaaaattttgctgggaaaacctttgtcgttaccggcacattaccaacc
ttaaaacgggatgaagccaaagccctaattcaaaaagcaggtggtaaaattactgattca
gttagcaaaaaaacagactttttagttgtgggtgcagatgccggttctaaactagaaaaa
gcccagaatttaggaattagccaattgacagaggcacagttattaacaatgctggcagaa
tag
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