Daucus carota (carrot): 108204254
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Entry
108204254 CDS
T05350
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108204254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204254
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108204254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_5th
Ig_NUP210_2nd
Ig_NUP210_16th
Ig_NUP210_3rd
Ig_NUP210_15th
Motif
Other DBs
NCBI-GeneID:
108204254
NCBI-ProteinID:
XP_017229094
UniProt:
A0A162B1I4
LinkDB
All DBs
Position
1:21420735..21429103
Genome browser
AA seq
1959 aa
AA seq
DB search
MSSSSIWLGLVVVVVVLLVSNAASYSKSESSNSGSRGPHIADVNILLPPKMTHPVHYRLQ
ASDGCFKWSWDHHDILSVLPEYNSSNHCSTSAHLKSIAPYSGRKETAVYATDVDTGRVIR
CKVYIDNVSRIQIFHSSVKLDLDGLATLRVRAFDSEENVFSSLVGIRFMWQLEPETDESA
HHLVHVPLKLSPLSDCGGLCGDLDVQIKLEDSGVFSDLYVVKGTEIGHERVSVDLLEPMY
DQMADSIVLTVAEAMSLYPPSPVFVLVGAVVQYLLTVVRGNIPRAVTLPSPYHQWSVLNS
SVSRIDKTMGIAHALNLGVTTVSVEDTRVAGHIQLSSLHVVLPDSLYIYISPLSHSGDIL
EGAAPNPSVSRWYVVTGRQYLLEMKVFSRVPESQEIYITETDDIKLYDDHSEFWNIFPVS
DTTTSKLVCLNSKILKAMSYGLGKLTATLTYSNGVHEVNQALKVVQEIMVCEQVKFSKDK
RSASGSILLPWAPSVHQEVELKATGGCAISSSDYKWFSSDMSIVCVSAHGIVQSKRPGKV
TIKVVSSFDSFNYDELEIEVSIPSSMIMLQQFPVETVVGSNLAASVTLKDSNGDNYFRCD
AFSSAIQWNTGSDSFTIVYTERESFLFDEQDVPDLLASLYSPPCAWARIYASATGRTMLH
ASLKKDYHPLDHSLTGSIDLKASALISAYLPLFVHQAGDGNQYGGYWFNLSYAEANNHLE
NLKILNLVPGTHMDVTLSGGPDQWGGGVEFTETVEILPQEQTKQKGVLVHNITTIYGSSY
RISCENWGEFKVLFKRGNLAGDDHILPAVAEAELLLSCILPSSISIVVDSSVNALDVIHT
AMQADRNSEQVRALPITVANGRTIRVSAVGISDSGNAFGNSSSLSISWEARNCDGLAFWD
AAATSISNWERFLVLQNSTGLCTVRATVGGFIETLSNHRFIKSYGSSKSLTDAVQLQLVS
TLKVTPEFSLLLFSHLAILDLSISGGSCALTTVVNDTQVAELIDRTPDLHCSQLSLAPKS
LGTALVTVYDMGLSPPLAATSVVQVADVDWLKITSGELISLVEGSSQSIDLLAGVNNGRT
FDFSQYMYMKIRVHIEDHNIVSLLDGISDGYLKAPKFILQAKNHGITTLYVSARQQSGRE
ILSQFIKVEVYAPLSIRPSNIYLVPGASYVLTVEGGPTIGGYVEYGSMNDETAIIHKSSG
RLIAIAPGNTTLVARIYSKGDEVMCHAFGYVVVEIPSSAMLNVQSEQLAIGSELQIYPSF
TNGNLFSLYEVCKNYEWSVEDEDVLTFKVVDLLHGYKLGASSIVLEASGSNEKLDLRFIR
EFYGKSSGQTHVSVSFSCNFVSRSFSQSRLYTASILLSVVPDLPLALGKPVTWVLPPHYI
TSNLLPSSSGSYSQGDAQSSKGTITYTLLKEYGGQKDIELVNEAISIQGVKIQTRESNNI
GCIQAKDRLTGRFEIASCVRVAEVAQIRVSRHAFPFYSVNLAVGAELSIPLIYYDAFGYP
FYEAYNIVLYDVETNYGDIVSINDTHDGNIYLKALQFGRALVRISLKNNSTKSDYLLITI
GARLYPHNPLLQLGNRLNFSIEGLTDQVSGWWTSVNTSTVSIDRVSGEAEAIGEGSTQVI
YESSDFKLLTFVTVSKGHMITVNAPKGILTNAPFSMRGYKFLVTFSDAFEPIREPGGAVK
TLLHECEVEPHFVGYADPWMDFESGMSYCLFFPYSPGHLVRSVGNLKDTRRDISVTINAF
VRGTNNISGSASAFFVGGFAILDMDHNSLHLNLTSKSNKSVITVVGNTDVVVDSQGRNQL
LITPIHRENNGVAGRAEYEVKVLSSWRFKDKLIISLAANGQRVEIDVNYEPEKIPALPSS
TKVSNWMVILVCSSVLISTLILFLCYLDRSNRYQANAAPTTRTATVQSPATPPRSSPSVV
NEHSPQTPQAFIDYVRRTVDETPYYRKDPRRRFNAQNTF
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctcctccatatggttaggtctagtagtagtagtggtggtgttgttggtgagc
aatgcggcgtcgtattctaagtccgaatcttctaattcagggagtagaggaccccacata
gctgatgtgaatatattgttgcctcccaagatgactcatcctgttcactatagacttcaa
gcaagtgatggctgcttcaaatggtcatgggatcatcatgatatcttgtctgttttaccc
gagtacaattcgagtaatcactgctccacgagtgcccacttgaagtcgatagcaccctat
agtgggcgcaaggagacggccgtgtatgctacggatgtggatactgggagggtcattcgt
tgcaaggtttatattgataatgtttctagaattcaaatatttcatagttctgtcaaactt
gatttagacgggcttgccactttacgtgttcgtgcctttgacagcgaagaaaatgtgttt
tcatccctagtgggcatacggttcatgtggcaactcgagcctgaaaccgatgaatcagct
catcaccttgttcatgtacctttaaagctctctccactaagtgattgtggtggcttgtgc
ggtgatctcgacgtccaaataaagcttgaagatagtggagttttttcagacctttatgtt
gtaaaaggaactgaaatcggtcatgaacgcgtttcagtagatctgcttgagccaatgtat
gatcagatggctgatagtattgttctaactgttgcagaagctatgtctctttatccacca
tcccctgtttttgttcttgttggtgctgttgtgcaatatctactaacagttgtgcgcggg
aatattcctcgagcagtaactttaccatctccgtatcatcaatggtcggttttgaattct
tcagtttctcggatagacaaaacgatgggtatagctcatgcactgaacttaggtgtcaca
actgttagtgttgaagatacaagagttgctggtcacatccaactgtcatcactacatgta
gtgcttccagattctttatatatatacatatcgcctttgtcacattctggtgatattctc
gaaggtgcagcacctaatccatctgtttcacgttggtatgttgttactggtagacaatat
cttcttgaaatgaaagttttctcgcgagtacctgagtcacaagagatatatataacggag
actgatgatataaagttgtatgatgaccattctgagttttggaatatattcccagtttca
gatactactacttccaaacttgtgtgtttgaattctaaaattctgaaagcaatgtcatat
ggattgggtaaactaactgcaactttaacctacagtaatggggttcatgaggtgaatcag
gctctcaaggttgtgcaagaaatcatggtttgtgagcaagtaaagtttagtaaggacaaa
agaagtgcatctgggagtattctccttccatgggccccttctgtccaccaggaggtggag
ctaaaggcaacaggaggttgtgccatatcatccagtgactacaaatggttttcttcagat
atgtccattgtgtgtgtatcagcacatggtattgttcagtcaaaaagaccagggaaagtt
actattaaagtggtatctagttttgattctttcaattacgatgagttggaaattgaagtt
tccattccttcctctatgatcatgctgcaacaatttcctgtagagactgttgtgggatca
aatcttgcagcttccgtgacacttaaagattctaatggtgataattatttcagatgtgat
gctttcagttcagccatacagtggaataccggaagcgattcttttacgattgtctataca
gagagagaatcattcttatttgatgagcaagacgtccctgatttgcttgcatcattatat
agcccgccatgtgcctgggcccgtatatatgcttctgctactgggcgaacaatgctacat
gcttcacttaaaaaggattatcatcctcttgatcattcgctcaccggatctatcgattta
aaagcatcagctctcatttcagcatatctaccactcttcgtgcatcaggcaggtgatggg
aaccagtatggtggttattggtttaatttgtcttatgctgaggctaataaccatttagag
aatttgaaaatcttgaatcttgttcctggcacacatatggatgtcactctgtccggggga
ccagatcagtggggaggaggtgttgaattcactgaaactgtggaaattttacctcaggaa
cagactaagcagaaaggggttttggtccataatataactaccatttatggtagctcatat
agaatatcatgcgagaattggggagaatttaaagttcttttcaaacgtggaaacttggct
ggcgatgatcatatactacctgctgtggcggaggctgaactattgctctcatgtatctta
ccatcttcaatctcaatagtagttgatagttctgtcaatgcccttgatgtgatacacaca
gctatgcaggctgaccggaattcagagcaagttcgggcccttccaatcactgtggctaat
gggcgaactattagagtatctgctgttggtattagtgactctgggaatgcttttgggaac
tcttcttctcttagtataagttgggaagcgagaaattgtgatggattggccttctgggat
gctgctgctacatccatatcaaattgggagaggtttttggtcttgcaaaactcaacagga
ctttgcactgttcgtgccacagttggtggattcatagagaccttgagtaatcatcgcttt
attaaatcctatggaagttcaaaatctcttaccgatgccgtacaactacaacttgtctct
actttaaaagtcactccagagttcagcttgttattattcagtcacttggctatattagat
ctctcaattagtggagggagttgtgcactgactactgtggttaatgatacccaagttgca
gaattaattgatcgtacaccagatttgcattgctctcaactatcactagcgcctaaaagt
ttagggactgcacttgttacggtttatgatatgggactttctcccccacttgctgccacc
tccgtggttcaagttgctgatgtagattggcttaagattacttcgggagaactaataagc
ctcgtggaaggaagttcccaatctatagatcttctggctggggtaaataatggacgcact
tttgacttctcccagtacatgtatatgaaaattcgtgtgcatattgaagatcataatatt
gttagtctgttagatggtattagcgatggatatctgaaggctccaaaatttatccttcag
gccaaaaatcacggtattacgactctttatgtaagtgctaggcaacaatctggacgtgaa
atattgagccaatttattaaggttgaagtttatgccccacttagtatacgtccttctaat
atatatcttgtacccggtgcttcttatgtgcttaccgtggaaggaggcccaactattggt
ggttatgttgaatatggaagtatgaatgatgagactgcaataattcataaatcttctggg
cggctgattgcaattgctccagggaatacaactctcgtggctagaatttatagcaaaggt
gatgaagtgatgtgtcatgcatttggatatgtagtagttgagatcccttcttcagcaatg
ttaaatgtgcagagtgagcaacttgccattggtagcgaactacaaatatatccttcgttt
accaacggtaatttgttttctttgtatgaggtgtgcaagaattatgaatggagcgttgaa
gatgaagacgtattgactttcaaagtagtagatctcttgcatggttacaagcttggtgcc
tcttccattgttttggaagcaagtggatctaatgagaagcttgacctaaggtttatccgc
gagttttatggaaagtcttctggccagactcatgtcagcgtttcattttcttgtaatttt
gtatcccgttcattttcacagtccaggttatatactgcatccatattgctctctgtggtg
cctgatctccctcttgctcttggaaaaccagtgacatgggtacttcctcctcattatata
acatcaaatctcttaccatcatcttcagggtcctacagtcagggagatgctcagagcagc
aaaggaaccattacttacactttgttaaaagaatatgggggtcagaaagatatagagttg
gtaaatgaagcaatatccatccaaggtgttaaaatacaaacaagagagagtaataatatt
gggtgcattcaggcgaaagatagattgactggaagatttgagattgcatcttgtgttaga
gtcgctgaggtagctcaaatcagagtgagcaggcatgcgtttccattttacagcgttaac
cttgctgttggagctgaactcagtattccgctgatatattacgatgcttttggataccct
ttctacgaggcttataacattgttttgtatgatgttgagactaactatggcgacattgtc
tccatcaatgacacacatgacggtaatatatatctgaaagcattacaatttggtagagca
ctggtccgaatatccttaaaaaataactcaaccaagtcggactacttgttgatcacaatt
ggtgctcgtttgtaccctcataatccactcctccaattgggtaatcgtcttaatttcagt
attgaaggcctcactgatcaagtatctggctggtggacgagtgttaatacaagtactgtt
tcaatagacagggtgtctggagaagctgaagccattggggaaggaagtactcaagtcatc
tatgaaagctcagatttcaagttgctgacgtttgttacagtctcaaaggggcatatgata
actgttaatgctccaaaagggattctaacaaatgctcctttctcaatgagaggttataaa
ttccttgtgacatttagtgatgcgtttgaacccatccgtgaaccagggggggctgttaaa
acactcctgcatgagtgtgaagtggagccacattttgttgggtatgcagacccatggatg
gattttgagagtggaatgtcatattgtctcttctttccatactcaccaggacacttggtt
cgttcagttggaaatttgaaggatacaaggcgggatataagtgttaccatcaatgctttt
gtgcgaggaacaaacaatatatctggatctgcttctgctttttttgttggtggatttgct
atactggacatggaccacaactcattacatttgaatttgacttccaagtctaacaagtct
gtcataactgtagtcggtaatacagatgttgttgttgactcgcaaggtcggaatcagttg
ctaatcacacctatacacagagaaaataatggagtagcagggcgggcagaatacgaggtc
aaagttctcagctcttggaggttcaaagataaattgataatttcactcgcagcaaatggc
cagagagtcgaaattgatgtaaactatgaacctgagaagatacccgcactgccttcatcc
actaaagtcagcaactggatggttatacttgtgtgttcctctgttctaatatcaacacta
attctgtttctctgttacctggatagatcaaatagatatcaagcaaatgcggcacctacc
acccgaactgccacagttcaatcaccggcaacccctcctcggagcagtccatccgtcgtg
aatgaacactctccacaaacgcctcaagctttcatagactatgtaaggagaacagttgat
gagactccttactacaggaaagatccgcgcaggaggtttaatgcacaaaataccttttag
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integrated database retrieval system
