KEGG   Daucus carota (carrot): 108204602
Entry
108204602         CDS       T05350                                 
Name
(RefSeq) 5'-3' exoribonuclease 4
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    108204602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108204602
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     108204602
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 108204602
NCBI-ProteinID: XP_017229614
UniProt: A0AAF1AJJ6
LinkDB
Position
1:complement(28403033..28420324)
AA seq 940 aa
MGVPAFYRWLADRYPLSIVDVVEEEAREDENGVLIPVDSCKPNPNNMEFDNLYLDMNGII
HPCFHPEGKTAPATYDDVFKSIFDYIDHLFSLVRPRQLLYMAIDGVAPRAKMNQQRSRRF
RASKDAAEAEAEEERLRNEFEAEGANLTPKQKFETSDTNVITPGTQFMAVLSVALQYYIQ
SRLNHNPGWQYTKVILSDSNVPGEGEHKIMSYIRLQRNQPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFLCSQVGHLAADCRGAPNKYLLDSIPIHKKKYQFL
NIWTLREYLQYDLQISNHPSEIDFERLIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
FVYRREFTAMGGYLTDAGEVLLDRVEHFIQAVAVYEDQIFQKRARLQKAQENNEEMRNKA
RKEVKDVTQAVAVDKVKLGEPGYKERYYCEKFELSDMNQIDEIKRDVVLHYVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKDLADLEILFFPGEPFKPFDQLMGTLPAASSGALPE
KFRNLMTDPSSPIHEFYPSDFAIDMNGKRFAWQGIAKLPFIDEKKLIAETRKLEDTLTEE
EHMRNRVMYDLLYVNPYHALSPYIVSYYNFVNQMPVNQRVPWPIDPNASGGMNGFMFLCE
RNGFRIVVTSPVRGLPDINDNHVLNVSFLNPVPHQHLPFPPKGVAMPGRILKSFDIKPLP
VLWHDDNSGRRQQNRDRPQVPGSISGPQLGEAAHRLLKNSLNIKSSPTSSGYSGQMLHRN
HPNNNATYRPRAVGPLGYDPRFSKDPVYYHTPEGIVRSPKPSYASNGYQGNKQNFKAQER
FSYQEQYLNIGNGMSNLTIDGGARSQQNAVMPMRMPNPGQSPNVRQQFMQNVGPPPSPPS
RWIARSTVGTTSMKQDKQIKQVYQIKSRTSQNMSDSGLQQ
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgggagttccagcgttttataggtggcttgcggatcgatatccactttcaattgttgat
gttgttgaagaagaggccagagaggacgagaatggcgtgcttatacctgttgattcgtgt
aaacctaatccaaacaacatggaatttgataacctctacttggatatgaacgggattatt
catccttgctttcatcccgaggggaagactgctcctgcaacttatgatgatgtattcaag
tcaatatttgattatattgaccacttattctcattggttcgccctagacaacttctttat
atggcaattgatggggtggctccgagggctaaaatgaatcagcaaaggtctcgacgtttc
agagcttctaaagatgctgctgaggcagaagccgaggaggagaggttgagaaacgaattt
gaggctgagggggctaatcttactcctaaacaaaagtttgaaacatcagataccaatgtc
atcacacctggaactcagttcatggctgttctttccgtagcacttcagtattatatacag
tctagattaaaccataatcctggctggcaatatacaaaggttattctttctgattcaaat
gtccccggggagggagagcacaagataatgtcctacattcggttacagcggaatcagcct
ggttttaatcccaacactcgccattgtctgtatggattggacgcggacctaatcatgtta
tctctagccacacatgaagttcacttttcaattctaagggaggtgattactcttcctggg
caacaggagaagtgttttttatgcagtcaagttggtcatcttgctgctgactgccgtggt
gctcctaataagtaccttctagacagtattcctatccacaagaagaaatatcagttcttg
aacatatggactttgcgagagtatttgcaatatgatctccagatttccaaccatccatct
gaaattgattttgaaagattgattgatgatttcgtgtttctttgtttttttgttggcaac
gacttccttcctcacatgcctacacttgaaatacgagagggtgctataaatctgcttatg
tttgtctatagaagggaatttacagcaatgggtggttatctcactgatgccggtgaggtt
ttgcttgatagagttgaacacttcattcaggcagttgccgtttacgaagatcaaatcttt
caaaagcgggctcgtctgcagaaggcacaagagaacaacgaagagatgcgaaataaagca
aggaaagaggttaaagatgtaacacaagctgttgctgttgacaaggtgaaattaggggaa
cctggttataaagagaggtattactgcgagaaatttgagttatcagatatgaaccaaatt
gatgaaatcaaaagagatgttgttttgcattatgtggaaggtttgtgctgggtttgccgg
tattactaccagggtgtctgctcgtggcaatggttttatccgtatcattatgctcctttt
gcttccgatcttaaagatctagctgatttggagattttgttctttcctggagagcctttt
aaacctttcgatcaactcatgggaaccttaccagctgcaagttctggtgctctacctgaa
aaattcaggaatttaatgacagatccatcatcgcctattcacgagttttatccttctgat
tttgcaattgacatgaatgggaagcggtttgcttggcagggtattgccaaattgccattt
attgatgagaagaaactgattgccgaaacaaggaagcttgaggacactttaacggaggag
gagcatatgcgaaacagggttatgtatgatctgctgtacgttaatccttatcatgcattg
tctccctatatagtctcatactataacttcgttaaccagatgcccgttaaccaaagagtt
ccctggccaattgatccaaatgcaagtggcggaatgaatggatttatgtttttgtgtgag
aggaatggatttagaattgtagttacttctcctgttcgtggactgccggacattaatgat
aaccatgttctaaatgtgtcgtttttgaacccagtacctcatcaacaccttccatttcct
cctaaaggggtagctatgcctggaaggattctgaaatcattcgacataaagccgttgcct
gtgctatggcatgatgataatagtggtcggcgccaacaaaatcgagataggccacaagtg
ccggggtccatatctggccctcagctgggagaagcagcccatcgcctgctaaaaaattca
ctgaatatcaaatctagtccaacatcatctggatattctggacaaatgttgcatagaaat
cacccaaataataatgcaacatacagaccaagagcagttggtccattgggatatgaccca
agattttcaaaggatcctgtctactatcatacacctgaaggaatagttagaagccccaag
cccagctatgcctcaaatgggtaccaagggaacaagcagaatttcaaggcacaagagagg
ttctcatatcaagaacagtacttgaacatcggaaatggaatgtctaatttgacgatagat
ggtggtgctagaagtcaacaaaatgcagtgatgccaatgcgaatgcctaatccaggtcaa
tcaccaaatgtgcgacaacaatttatgcaaaatgttggaccacctccatccccaccaagt
aggtggattgctcgatcaacagttggaactactagtatgaaacaagataagcagataaag
caggtctatcagataaagagtcggacatctcagaacatgtcagattcaggattgcagcag
taa

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