Daucus carota (carrot): 108204602
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Entry
108204602 CDS
T05350
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108204602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204602
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108204602
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
108204602
NCBI-ProteinID:
XP_017229614
UniProt:
A0AAF1AJJ6
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All DBs
Position
1:complement(28403033..28420324)
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AA seq
940 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVVEEEAREDENGVLIPVDSCKPNPNNMEFDNLYLDMNGII
HPCFHPEGKTAPATYDDVFKSIFDYIDHLFSLVRPRQLLYMAIDGVAPRAKMNQQRSRRF
RASKDAAEAEAEEERLRNEFEAEGANLTPKQKFETSDTNVITPGTQFMAVLSVALQYYIQ
SRLNHNPGWQYTKVILSDSNVPGEGEHKIMSYIRLQRNQPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFLCSQVGHLAADCRGAPNKYLLDSIPIHKKKYQFL
NIWTLREYLQYDLQISNHPSEIDFERLIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
FVYRREFTAMGGYLTDAGEVLLDRVEHFIQAVAVYEDQIFQKRARLQKAQENNEEMRNKA
RKEVKDVTQAVAVDKVKLGEPGYKERYYCEKFELSDMNQIDEIKRDVVLHYVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKDLADLEILFFPGEPFKPFDQLMGTLPAASSGALPE
KFRNLMTDPSSPIHEFYPSDFAIDMNGKRFAWQGIAKLPFIDEKKLIAETRKLEDTLTEE
EHMRNRVMYDLLYVNPYHALSPYIVSYYNFVNQMPVNQRVPWPIDPNASGGMNGFMFLCE
RNGFRIVVTSPVRGLPDINDNHVLNVSFLNPVPHQHLPFPPKGVAMPGRILKSFDIKPLP
VLWHDDNSGRRQQNRDRPQVPGSISGPQLGEAAHRLLKNSLNIKSSPTSSGYSGQMLHRN
HPNNNATYRPRAVGPLGYDPRFSKDPVYYHTPEGIVRSPKPSYASNGYQGNKQNFKAQER
FSYQEQYLNIGNGMSNLTIDGGARSQQNAVMPMRMPNPGQSPNVRQQFMQNVGPPPSPPS
RWIARSTVGTTSMKQDKQIKQVYQIKSRTSQNMSDSGLQQ
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttttataggtggcttgcggatcgatatccactttcaattgttgat
gttgttgaagaagaggccagagaggacgagaatggcgtgcttatacctgttgattcgtgt
aaacctaatccaaacaacatggaatttgataacctctacttggatatgaacgggattatt
catccttgctttcatcccgaggggaagactgctcctgcaacttatgatgatgtattcaag
tcaatatttgattatattgaccacttattctcattggttcgccctagacaacttctttat
atggcaattgatggggtggctccgagggctaaaatgaatcagcaaaggtctcgacgtttc
agagcttctaaagatgctgctgaggcagaagccgaggaggagaggttgagaaacgaattt
gaggctgagggggctaatcttactcctaaacaaaagtttgaaacatcagataccaatgtc
atcacacctggaactcagttcatggctgttctttccgtagcacttcagtattatatacag
tctagattaaaccataatcctggctggcaatatacaaaggttattctttctgattcaaat
gtccccggggagggagagcacaagataatgtcctacattcggttacagcggaatcagcct
ggttttaatcccaacactcgccattgtctgtatggattggacgcggacctaatcatgtta
tctctagccacacatgaagttcacttttcaattctaagggaggtgattactcttcctggg
caacaggagaagtgttttttatgcagtcaagttggtcatcttgctgctgactgccgtggt
gctcctaataagtaccttctagacagtattcctatccacaagaagaaatatcagttcttg
aacatatggactttgcgagagtatttgcaatatgatctccagatttccaaccatccatct
gaaattgattttgaaagattgattgatgatttcgtgtttctttgtttttttgttggcaac
gacttccttcctcacatgcctacacttgaaatacgagagggtgctataaatctgcttatg
tttgtctatagaagggaatttacagcaatgggtggttatctcactgatgccggtgaggtt
ttgcttgatagagttgaacacttcattcaggcagttgccgtttacgaagatcaaatcttt
caaaagcgggctcgtctgcagaaggcacaagagaacaacgaagagatgcgaaataaagca
aggaaagaggttaaagatgtaacacaagctgttgctgttgacaaggtgaaattaggggaa
cctggttataaagagaggtattactgcgagaaatttgagttatcagatatgaaccaaatt
gatgaaatcaaaagagatgttgttttgcattatgtggaaggtttgtgctgggtttgccgg
tattactaccagggtgtctgctcgtggcaatggttttatccgtatcattatgctcctttt
gcttccgatcttaaagatctagctgatttggagattttgttctttcctggagagcctttt
aaacctttcgatcaactcatgggaaccttaccagctgcaagttctggtgctctacctgaa
aaattcaggaatttaatgacagatccatcatcgcctattcacgagttttatccttctgat
tttgcaattgacatgaatgggaagcggtttgcttggcagggtattgccaaattgccattt
attgatgagaagaaactgattgccgaaacaaggaagcttgaggacactttaacggaggag
gagcatatgcgaaacagggttatgtatgatctgctgtacgttaatccttatcatgcattg
tctccctatatagtctcatactataacttcgttaaccagatgcccgttaaccaaagagtt
ccctggccaattgatccaaatgcaagtggcggaatgaatggatttatgtttttgtgtgag
aggaatggatttagaattgtagttacttctcctgttcgtggactgccggacattaatgat
aaccatgttctaaatgtgtcgtttttgaacccagtacctcatcaacaccttccatttcct
cctaaaggggtagctatgcctggaaggattctgaaatcattcgacataaagccgttgcct
gtgctatggcatgatgataatagtggtcggcgccaacaaaatcgagataggccacaagtg
ccggggtccatatctggccctcagctgggagaagcagcccatcgcctgctaaaaaattca
ctgaatatcaaatctagtccaacatcatctggatattctggacaaatgttgcatagaaat
cacccaaataataatgcaacatacagaccaagagcagttggtccattgggatatgaccca
agattttcaaaggatcctgtctactatcatacacctgaaggaatagttagaagccccaag
cccagctatgcctcaaatgggtaccaagggaacaagcagaatttcaaggcacaagagagg
ttctcatatcaagaacagtacttgaacatcggaaatggaatgtctaatttgacgatagat
ggtggtgctagaagtcaacaaaatgcagtgatgccaatgcgaatgcctaatccaggtcaa
tcaccaaatgtgcgacaacaatttatgcaaaatgttggaccacctccatccccaccaagt
aggtggattgctcgatcaacagttggaactactagtatgaaacaagataagcagataaag
caggtctatcagataaagagtcggacatctcagaacatgtcagattcaggattgcagcag
taa
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