Daucus carota (carrot): 108212061
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Entry
108212061 CDS
T05350
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108212061
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108212061
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108212061
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
108212061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
Cep57_CLD_2
Motif
Other DBs
NCBI-GeneID:
108212061
NCBI-ProteinID:
XP_063945358
LinkDB
All DBs
Position
3:complement(2769591..2784343)
Genome browser
AA seq
1613 aa
AA seq
DB search
MDSGSGNRGNKRASYDDSTRSKVKKMKCLDLIIYEKVYKFRVLLPNGLCLSLRVDEPATK
KMPVVVFADLVKEEYDRMKKSDKIRRRSIDWDSADLCLIDISEKRFKDLILFEGYDPNKV
HTLRLDDGSKGDEVYENMWDLTPDVELLRELPQEYAFETALADIIDNSLQAIWSKKKDRL
ISVDISEDKISIFDNGPGMDASEENSIVKWGKMGSSLHRSSRGQAIGGKPPYLKPFFGMF
GYGGSVSSMHLGRHTVISSKTKYSKKVCTLYLQRDALLRSSDSDKTWQANGGLRDPSKDE
MKLSPDGSFTKVEISDLKMKSLDVDLLRCKLKDIYFPYIQCDDLSTSGKTLTPIEFQVNG
IDLTEVEGGEVAITNLNSCNGRPFVLQLRFTSNQDSSSQKSPGKRASQEANAQLKCLYFP
VVQGKESIEKILEQLEAERCGVAENFESFSHVSIRCLGRLLPDARWAWLPFMEPKSRKAD
KAQIFKKCCSRVKCFIETDGGFYPTPSKTDLMHHHPCTIALKNFGSKNSEKERDVHVEIY
KDGKKLSLQQMEKQYQEWILEMHNIYDEESDCGEDEPVIIINPSNKKQLGISSDVVRVHK
MIRRKGKSWQAGQKIKVLKGACSGFYKNNIYAVLEYILLDGFKGDAGGESRIICRQIGTS
EEKGCLLIDNEKGNPSIDIRESKSLPINIIDSGKCLSVESAEWSLQLEKLQHKIPSSIDI
LCARHCEELEVEESLPFDTPVFAGHAAPDEVIAVVRPASFSSELVSENLDQKHIALTVLD
MVLEIKLNSQDKNLQENNHICSIRTPPSTRNGFRGLYIFPVKPRLIFEKAGEYTFTFHIE
DSNFRRFVKGVTVKALPQVDSWGFVSDTQCAKLSVRVGSFFPPISIACYDKYGNRTSFSH
VPKVMAKVLTKEIVLFQSEKLNQNISSKNSVLTVENLLVESHNLDFIRPSYEAKLILYSE
DEPFCVIIPCQVIPGSIHHLIAKPKDFMKQLLPGNVIQDLELEVFDVYGNHVKQDTEMLL
DMVGFCFQHKTKRIQVDNRGCIDLSGLLKVSTGYSETVSLSVLSNAKTVFSEKSQTEKRM
IRVATEIPEKCFAGSQLENVVFEIVKSDGVIDETINDNEKGDMSHALILKSDSTDIDDSV
KYSFRHGCCTVRAIPLPQIEGSFSFLAAHSRYPKLNMTITVLVEKAPEIVYDSSQPHCTD
KDNLFLEKSSNLETPKLQHDDRSIMLVKSPESAKGIKNIAGSLYNEQKELKDKIVEYGTY
IGEHEKTIEMLHSQRVEFEQSLAKMQASLDAISDGDSSYSPDKERMLKEIELSHTAASVV
CKLSRNKRTYDFSKDIIGVVALLGNVETNELGRILAEFLGEEQMLGVVCKSLKAAYNLET
CDVDGSVKGSTGLQALASEYGISLDGRYSVICLEDTRPYQGDYDSGDPQRMLLLPNPTLT
NGNCPPGFIGYAINMIYLDAHQLYTRTCGGKGLRETLFYHLLGEVQVYKTRESMRKALEK
SCIQHGAVSLDGGIIRGNGVISLGRREPSIHFPVASKSQYRRSAKTNNQRIQRLIDAKKS
MLRTTVDKLDKENEMYEQNMKKYEKYRDKYTKFLDQKGPLLRYFNEVASNSPS
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggactcaggaagtgggaacagaggaaacaagagggcttcttacgatgattccaccagg
tctaaagtaaaaaagatgaaatgcttggatttaatcatatatgaaaaagtgtacaagttt
cgggttcttctgccaaatggtttgtgtttgtctttacgcgttgatgagcctgcaaccaag
aaaatgcctgttgtggtgtttgctgatttggtgaaagaggagtatgatagaatgaaaaaa
tctgacaaaatcaggaggaggagtatcgattgggatagtgctgatttatgccttatcgat
atttccgagaaaaggtttaaagatttaatcctttttgagggttatgatcctaataaggtt
cacacactgaggcttgatgatgggtccaagggagatgaagtttatgagaatatgtgggat
ttgacaccagatgttgagttgttgagggagctacctcaagagtatgcctttgaaactgct
cttgctgatataattgacaattctcttcaagcaatttggtccaagaagaaggaccgactg
attagtgtggatataagtgaagacaaaatttccatatttgacaatggtcctggcatggat
gctagtgaagagaactctattgtgaaatggggaaagatgggttcatccctgcacagatca
tctagaggacaagcaattggtggaaaacctccttacttaaagccattttttggtatgttc
gggtatggaggatctgtttcatcaatgcatctgggaagacatactgtcatatcctctaag
acgaaatattccaagaaagtttgtacattgtatcttcagagagatgccttactaagaagt
tctgactcagacaagacctggcaggcgaatggtggcctaagagacccttcaaaagatgaa
atgaaactatcacccgatggaagtttcacaaaggtagaaatttctgatttgaaaatgaaa
agtttggatgtagatcttctccgatgcaaattaaaggacatctattttccttacatacag
tgtgatgatttgtctacttcaggcaagactttaacgccaattgagtttcaggttaatgga
attgatttaacagaagtagaaggcggcgaggtagctattaccaacttaaactcctgcaat
ggtcgtccgtttgttttacaattacgttttacatccaatcaggattcttcttctcaaaag
agcccaggaaaacgagcatctcaagaagcaaatgcacagctaaagtgcctatactttcct
gttgttcagggtaaagaaagcattgagaaaattttggagcagcttgaagccgaaagatgt
ggtgttgctgaaaattttgaaagcttcagtcatgtatcaattcggtgcttaggtcgtcta
cttccagatgctcgatgggcgtggcttccttttatggagcctaaatcaaggaaggctgat
aaggcccaaatatttaaaaaatgctgctcaagggtgaaatgcttcattgaaactgatggt
ggtttttacccaaccccatcgaagaccgatttaatgcatcaccatccttgtactattgcc
ttaaagaactttgggagcaagaattcagagaaggaaagagatgtacatgtggaaatttac
aaagatgggaagaaactgtcacttcagcaaatggagaaacaatatcaagagtggattctc
gagatgcataatatttatgatgaagagagtgactgtggtgaggatgagcctgttatcatc
attaatccctcaaacaagaaacagctggggatttcttcagatgttgtcagggttcataaa
atgataaggaggaagggtaaatcctggcaggcgggacagaaaattaaagttttgaaggga
gcgtgttcaggattttacaagaacaatatctatgctgtgctagaatacattctcttagat
ggttttaaaggtgatgcaggtggggagtctcgtattatttgcaggcagataggtacctca
gaagaaaagggatgccttcttatagataatgaaaaaggaaatccaagtatagatatccgt
gaatccaaatccttgcccatcaatattattgattctggaaagtgtctttctgttgaatct
gccgagtggagtttacaacttgaaaagctgcagcataaaattccctcctcaatcgatata
ctctgtgcccgtcattgtgaagaacttgaagttgaagagtcgttgcctttcgatactcct
gtatttgccggtcatgctgctcctgatgaagtcattgcagttgtacgccctgcctctttt
agttctgaattggtgtctgaaaatttggatcagaagcatattgcactgacagtccttgat
atggttctagaaatcaaactaaattcccaagataagaatctacaagaaaataaccatatt
tgttctattcgtaccccaccttcaacacgtaatgggtttcggggtctgtatatattccca
gtgaaacccagactgatatttgaaaaagctggggaatatacatttacttttcacattgaa
gactcaaactttaggaggtttgttaaaggcgtaacggttaaggcactgccccaggttgat
agttgggggtttgtaagtgatacacaatgtgcaaaactcagtgttagggttggttctttt
ttccccccaatttcgattgcatgctatgataagtatggaaaccgcacttcattttcacat
gtccctaaagtgatggccaaagttttaacaaaagagattgtcctgtttcaatctgaaaag
ttaaatcaaaatatttcatccaaaaattcagttctcacagtagagaacttactggttgaa
agtcataatctggacttcatacgtccaagctacgaagctaaactaattttatactcagaa
gatgaacccttttgcgtaatcattccctgccaagttattccaggatcaatacaccatctt
attgctaagccaaaagattttatgaagcagctacttccaggaaatgttattcaagatctt
gaactggaggtcttcgatgtatatggtaatcacgttaaacaagatacggaaatgttgttg
gatatggtcgggttttgttttcaacataaaacaaagagaatacaggtggataatcgtggg
tgtattgatcttagtggtctgttgaaagtttcgacaggttattcggaaactgtgtcactt
tctgtcttatcgaatgcaaaaactgtctttagcgagaagtcccaaactgagaaaaggatg
ataagagttgcaactgagatacctgagaagtgttttgctggctctcaactggaaaatgtt
gtgtttgaaattgtcaaatctgatggtgttatcgacgaaacaataaacgataatgagaag
ggtgatatgtcccatgctctaatattgaagtctgactccacagatatcgacgattctgtg
aaatatagctttcgtcatggctgctgcactgttcgtgctattccgcttcctcagatagaa
ggaagtttctcctttcttgctgcacattctcgctacccgaagcttaacatgaccataacg
gtgcttgtagagaaagctcctgaaattgtgtatgacagtagccagcctcattgtactgat
aaagataatttattccttgagaagtcatccaatttggaaactccaaaacttcagcatgac
gatagatcgataatgctggtaaaaagcccggaatctgccaagggcataaaaaacatagct
ggaagcctttacaatgaacaaaaggaacttaaggacaagattgtggagtatggaacgtac
attggagagcatgaaaaaactattgaaatgctccatagccagcgagtggaatttgagcaa
agcctggccaaaatgcaagcttcattggatgccatctctgatggtgactcaagttattca
ccagataaggagagaatgctgaaagagattgaattaagtcacacagctgcttcggtcgtc
tgcaaattatcaaggaacaagagaacttatgatttttcaaaagatattataggcgtcgtt
gcacttcttggaaatgttgaaaccaatgaacttggaaggattttggcagagtttctgggt
gaggagcaaatgcttggagtcgtgtgtaaatctcttaaagcggcttacaatcttgaaaca
tgtgatgtagatggaagtgtgaagggttccactggtcttcaagcactggcttctgagtac
ggtatatctttggatggtcgttattctgttatctgtcttgaagatacaaggccatatcaa
ggggattatgacagtggcgatccccagaggatgcttctgttgcccaatcctacattgaca
aatggaaattgtccaccggggtttataggttatgcaatcaatatgatatatttggatgcc
catcagctgtacacaaggacttgtggtggtaaaggtcttcgggagaccttgttctatcat
cttttaggcgaggtccaagtctataaaaccagggaaagcatgagaaaggcactagaaaaa
tcttgcattcagcacggtgcagtttcattggacggaggcatcatcagaggaaatggagtt
atttctctaggacgtagggaaccctctatccactttcctgttgcatcgaaaagccagtat
cgtcgttcagccaagacaaataaccagcgcatccaacgcctgatcgatgcaaagaaatcc
atgttgaggactacagttgacaagctcgacaaagaaaacgaaatgtatgagcagaacatg
aaaaagtacgaaaaatacagagacaagtatacgaaattcttagatcagaagggcccgttg
ctgcgatatttcaatgaagttgcatcaaactctcccagctga
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