Daucus carota (carrot): 108220328
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Entry
108220328 CDS
T05350
Name
(RefSeq) ATP-dependent helicase rhp16
KO
K15083
DNA repair protein RAD16
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108220328
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
108220328
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4_2
ResIII
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
DEAD
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
108220328
NCBI-ProteinID:
XP_063941814
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All DBs
Position
1:complement(28657354..28667524)
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AA seq
806 aa
AA seq
DB search
MNPNADPNSLLPIKGDDYQQEASWDEGSVTMDISDCELGDRKELIVGNDTQGRKESPILM
WKAWEDENARWLENIQLTFFKMCDHSGLMWKAWEEDHWRWLRSLNDADADIDLANVNDVL
AETAEPPSSVIMPLLRYQKEWLAWALQQEESAARGGILADEMGMGKTVQAIALVLAKKEL
QGAGDGDFPQQSSSLGLPKAKATLVICPLIAVTQWVNEISRVTVTGSQKVMVYHGSKRGK
SLHEFLDHDFVITTYSVVQAEYRKFFLPEKQECPWCGELFHEEFFALHQDNCVCYPEYVL
GKNKPLIKCLKNKEPLKKGKRLSKDKASGAGSSTNDSEGADKGPHLSSVDWNRIILDEAH
HIKDNLSSTSHAVLSLNSTYKWALSGTPLQNRVGELYSLIRFLQIFPYSYYFCEDCDCRS
PNCSVIECSICNHKTYRHFCWWDKYITRPIKLGGHTGRGRDAMLLLKHKILKSILLRRTK
VGRSADLALPPKMIFLRRDSLDIKEEDYLRSLYNDTQAQFNTYAEGTVVNNYANIYDRLM
RVRQALNHPYLVVYSKNALSQSSVANDDGEVKCGLCHESVEDPVVNACGHTFCQFCMINF
SASAGQGSCPTCFITGFKSSSILNRIRLHDFKTSTKLEALREEIRFMVQRDGTAKGIVFS
QFPSFLDLIHYSLQKSGVQCVQLDGSTNMKARNTAIKRFNEDPDCKLFLMSLKAGGTALN
LTVASHVFLMDVWWNPAVEQQAQDRVHRIGQCKPVRVVRFVIEGSVEERILKLQEKKKLV
FEGTVSGSADALGKLSERDLKFLFST
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccaacgccgatcccaattctctacttccgatcaagggagatgattatcagcaa
gaagcaagctgggatgaaggtagtgtcactatggacatttcggattgtgaattaggtgat
agaaaagaattgattgttggaaacgacactcaagggagaaaggaaagcccaatcttgatg
tggaaagcttgggaagatgaaaatgccagatggttagaaaacatacaactaacatttttt
aagatgtgtgatcattctggtttgatgtggaaagcctgggaagaagaccattggagatgg
ttacgctctctcaacgatgccgatgcagacatagatttggcgaatgtcaatgatgttctt
gccgagactgcagaaccgccgagcagtgtgattatgcctctgctgaggtatcagaaagag
tggttagcgtgggcgctgcagcaggaggaatctgcagcccggggaggcatacttgccgat
gagatggggatgggcaagactgtccaggccatcgcactggtcctggctaagaaggaactt
caaggagctggggatggagatttcccccaacaaagttcatctcttgggttgccaaaagcg
aaggcgacccttgtcatatgtcctctcattgcggtgacgcaatgggtcaacgagattagc
cgtgtcacggtgacaggtagccaaaaggtgatggtctatcatggatccaagaggggcaag
tcccttcatgaattcttggatcatgatttcgtgattaccacgtattctgtcgtccaagct
gaatacaggaagtttttcttgccggagaaacaagaatgcccttggtgtggagagttgttt
cacgaagagttttttgctcttcaccaagataattgtgtgtgttatccagaatatgttttg
gggaagaacaagccgttgataaagtgtctaaagaataaggaacctctaaagaaagggaag
aggttgagtaaggacaaggcctctggagctggttcttcaactaatgattcggaaggagct
gataaaggcccacatttgtcctccgtggactggaaccgaataatcttggatgaggctcac
catattaaagataatctaagtagcacttcgcatgctgttctttccttaaactctacctac
aaatgggctctaagtggcactccccttcaaaatcgtgttggagaactttactcacttatc
cgcttcctccagatttttccatattcttattacttttgcgaggattgtgattgcagatca
cctaattgcagtgtaattgaatgttcaatttgcaatcataaaacttacagacacttttgc
tggtgggacaaatatattacccgaccaataaaattgggaggacatactgggcgtggcaga
gatgcaatgcttttgctgaagcataagattttgaaaagtatactccttaggcgtactaaa
gtgggtagatctgctgatcttgcacttcctccgaaaatgatctttttacgacgggactcg
ctggatatcaaggaagaggattacctcagatcattgtacaacgatactcaggcccaattt
aacacatatgcagaaggaactgttgtgaataactacgccaacatctatgatcgcctcatg
cgtgttcggcaggctttgaatcatccgtacctagtggtatactctaaaaatgccctgagc
caatcaagtgtggcgaatgatgatggtgaagtaaaatgcgggctgtgtcatgaatctgta
gaagatcctgtggttaatgcatgtggacataccttctgtcaattttgtatgatcaacttc
tcagctagtgcgggacaaggctcatgccctacatgcttcattacaggttttaagagctca
agtattctcaacagaattcggcttcatgacttcaagactagtacaaaactagaggctttg
agggaagaaattagatttatggttcagagggatggtactgcaaaaggaatcgtttttagc
caattcccatcattcttggatttgattcactattcgctgcagaagtcaggagttcagtgt
gttcagttggatggatctactaatatgaaggcaagaaatactgccatcaaaaggtttaac
gaggacccagattgtaaattatttctgatgagcttgaaagcgggagggactgcacttaat
ctcacagtggcatcacatgtattcttgatggacgtgtggtggaatcctgcagttgagcaa
caggctcaagatagagtacatagaattgggcagtgtaaacctgtgagggttgtgaggttc
gtaatagaaggttcagttgaagaaagaatcttaaagttgcaagagaagaagaaattagta
tttgaagggactgttagtgggtcggccgatgcactgggaaagttatcagagagagacttg
aaattcctgttttcaacataa
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