KEGG   Daucus carota (carrot): 108220328
Entry
108220328         CDS       T05350                                 
Name
(RefSeq) ATP-dependent helicase rhp16
  KO
K15083  DNA repair protein RAD16
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108220328
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NER4 complex
      108220328
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C zf-C3HC4_2 ResIII zf-C3HC4 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 DEAD zf-C3HC4_4
Other DBs
NCBI-GeneID: 108220328
NCBI-ProteinID: XP_063941814
LinkDB
Position
1:complement(28657354..28667524)
AA seq 806 aa
MNPNADPNSLLPIKGDDYQQEASWDEGSVTMDISDCELGDRKELIVGNDTQGRKESPILM
WKAWEDENARWLENIQLTFFKMCDHSGLMWKAWEEDHWRWLRSLNDADADIDLANVNDVL
AETAEPPSSVIMPLLRYQKEWLAWALQQEESAARGGILADEMGMGKTVQAIALVLAKKEL
QGAGDGDFPQQSSSLGLPKAKATLVICPLIAVTQWVNEISRVTVTGSQKVMVYHGSKRGK
SLHEFLDHDFVITTYSVVQAEYRKFFLPEKQECPWCGELFHEEFFALHQDNCVCYPEYVL
GKNKPLIKCLKNKEPLKKGKRLSKDKASGAGSSTNDSEGADKGPHLSSVDWNRIILDEAH
HIKDNLSSTSHAVLSLNSTYKWALSGTPLQNRVGELYSLIRFLQIFPYSYYFCEDCDCRS
PNCSVIECSICNHKTYRHFCWWDKYITRPIKLGGHTGRGRDAMLLLKHKILKSILLRRTK
VGRSADLALPPKMIFLRRDSLDIKEEDYLRSLYNDTQAQFNTYAEGTVVNNYANIYDRLM
RVRQALNHPYLVVYSKNALSQSSVANDDGEVKCGLCHESVEDPVVNACGHTFCQFCMINF
SASAGQGSCPTCFITGFKSSSILNRIRLHDFKTSTKLEALREEIRFMVQRDGTAKGIVFS
QFPSFLDLIHYSLQKSGVQCVQLDGSTNMKARNTAIKRFNEDPDCKLFLMSLKAGGTALN
LTVASHVFLMDVWWNPAVEQQAQDRVHRIGQCKPVRVVRFVIEGSVEERILKLQEKKKLV
FEGTVSGSADALGKLSERDLKFLFST
NT seq 2421 nt   +upstreamnt  +downstreamnt
atgaatcccaacgccgatcccaattctctacttccgatcaagggagatgattatcagcaa
gaagcaagctgggatgaaggtagtgtcactatggacatttcggattgtgaattaggtgat
agaaaagaattgattgttggaaacgacactcaagggagaaaggaaagcccaatcttgatg
tggaaagcttgggaagatgaaaatgccagatggttagaaaacatacaactaacatttttt
aagatgtgtgatcattctggtttgatgtggaaagcctgggaagaagaccattggagatgg
ttacgctctctcaacgatgccgatgcagacatagatttggcgaatgtcaatgatgttctt
gccgagactgcagaaccgccgagcagtgtgattatgcctctgctgaggtatcagaaagag
tggttagcgtgggcgctgcagcaggaggaatctgcagcccggggaggcatacttgccgat
gagatggggatgggcaagactgtccaggccatcgcactggtcctggctaagaaggaactt
caaggagctggggatggagatttcccccaacaaagttcatctcttgggttgccaaaagcg
aaggcgacccttgtcatatgtcctctcattgcggtgacgcaatgggtcaacgagattagc
cgtgtcacggtgacaggtagccaaaaggtgatggtctatcatggatccaagaggggcaag
tcccttcatgaattcttggatcatgatttcgtgattaccacgtattctgtcgtccaagct
gaatacaggaagtttttcttgccggagaaacaagaatgcccttggtgtggagagttgttt
cacgaagagttttttgctcttcaccaagataattgtgtgtgttatccagaatatgttttg
gggaagaacaagccgttgataaagtgtctaaagaataaggaacctctaaagaaagggaag
aggttgagtaaggacaaggcctctggagctggttcttcaactaatgattcggaaggagct
gataaaggcccacatttgtcctccgtggactggaaccgaataatcttggatgaggctcac
catattaaagataatctaagtagcacttcgcatgctgttctttccttaaactctacctac
aaatgggctctaagtggcactccccttcaaaatcgtgttggagaactttactcacttatc
cgcttcctccagatttttccatattcttattacttttgcgaggattgtgattgcagatca
cctaattgcagtgtaattgaatgttcaatttgcaatcataaaacttacagacacttttgc
tggtgggacaaatatattacccgaccaataaaattgggaggacatactgggcgtggcaga
gatgcaatgcttttgctgaagcataagattttgaaaagtatactccttaggcgtactaaa
gtgggtagatctgctgatcttgcacttcctccgaaaatgatctttttacgacgggactcg
ctggatatcaaggaagaggattacctcagatcattgtacaacgatactcaggcccaattt
aacacatatgcagaaggaactgttgtgaataactacgccaacatctatgatcgcctcatg
cgtgttcggcaggctttgaatcatccgtacctagtggtatactctaaaaatgccctgagc
caatcaagtgtggcgaatgatgatggtgaagtaaaatgcgggctgtgtcatgaatctgta
gaagatcctgtggttaatgcatgtggacataccttctgtcaattttgtatgatcaacttc
tcagctagtgcgggacaaggctcatgccctacatgcttcattacaggttttaagagctca
agtattctcaacagaattcggcttcatgacttcaagactagtacaaaactagaggctttg
agggaagaaattagatttatggttcagagggatggtactgcaaaaggaatcgtttttagc
caattcccatcattcttggatttgattcactattcgctgcagaagtcaggagttcagtgt
gttcagttggatggatctactaatatgaaggcaagaaatactgccatcaaaaggtttaac
gaggacccagattgtaaattatttctgatgagcttgaaagcgggagggactgcacttaat
ctcacagtggcatcacatgtattcttgatggacgtgtggtggaatcctgcagttgagcaa
caggctcaagatagagtacatagaattgggcagtgtaaacctgtgagggttgtgaggttc
gtaatagaaggttcagttgaagaaagaatcttaaagttgcaagagaagaagaaattagta
tttgaagggactgttagtgggtcggccgatgcactgggaaagttatcagagagagacttg
aaattcctgttttcaacataa

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