KEGG   Daucus carota (carrot): 108220338
Entry
108220338         CDS       T05350                                 
Name
(RefSeq) ATP-dependent helicase rhp16
  KO
K15083  DNA repair protein RAD16
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108220338
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NER4 complex
      108220338
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX DEAD zf-RING_5 zf-C3HC4_4 zf-C3HC4_3 zf-RING_2 zf-Nse zf_RING_Vps8_fungal
Other DBs
NCBI-GeneID: 108220338
NCBI-ProteinID: XP_017249570
LinkDB
Position
1:complement(28675487..28681526)
AA seq 756 aa
MGFKSNLLGDFVNVLKGQLARDRSGLMWKVWEEDHWRWLSSLNDVEADIDLENVNDVLAE
TAEPPSSVIMPLLRYQKEWLAWALQQEESAAKGGILADEMGMGKTAQAIALVMAKKEIEG
AGDGAFPQPSSSSGLPKVKATLVICPVIALMQWANEISRFTLAGSNKVLIYYGSKRERSL
KEFADHDFVITTYSVVETEYRKHVLPEKQECPWCGELFHEEFLPLHRDFKCYPEYVLGKT
KPLKKKNTDAGVDERNKEVLKKGKRLSKDKASGAGSSANDSEGADKGPRERNCNLYSVDW
NRIILDEAHHIKDNRSSTSHAVLSFNSTYKWALSGTPLQNRVGELYSLIRFLQIFPYSYY
FCEDCDCRTPNSSLIECSICNHKTYRHFCWWDKYITRPIKLGGHTGRGRDAMLLLKHKIL
KSILLRRTKVGRSADLALPPKMIFLRRDSLDIKEEDYLRSLYNDTQAQFNTYVTEGTVMN
NYANIYNRLTRVRQALNHPYLVVYSKNALSQSSVANDDGEVKCGLCHKSVEDPVVNACGH
TFCQSCLINFSASAGQGSCPTCFITGFKSSSILNRIRLGDFKTSTKLEALREEIRFMVQR
DGTAKGVVFSQFPSFLDLIHYSLQKSGVQCVQLDGSTNMKARDTAIKRFNEDPDCRLFLT
SLKAGGTALNLTVASHVFLMDVWWNPAVEQQAQDRVHRIGQFKPVRVVRFVIEGSVEERI
LELQEKKQLVFEGTVSGSADALGKLSERDLKFLFSI
NT seq 2271 nt   +upstreamnt  +downstreamnt
atgggatttaaatcgaatttactaggggattttgtaaatgtgttgaaaggccagcttgcg
cgagatcgttctggtttgatgtggaaagtctgggaagaagaccattggagatggttaagc
tctctcaacgatgtcgaggcagacattgatttggaaaatgtcaatgatgttcttgccgag
acggctgaaccaccgagcagtgtgattatgcctctgctgaggtatcaaaaagagtggtta
gcatgggcgctgcagcaggaggagtctgcagccaaaggaggcatccttgcagacgaaatg
gggatgggcaagacggctcaagccatcgcgcttgtgatggctaagaaggaaattgaagga
gccggggatggagcattcccccaaccaagttcatcctctggtttgccaaaggtgaaagcc
actcttgtgatttgccctgtgattgctctgatgcaatgggcaaatgagatcagccgcttc
accttggcaggaagcaacaaggtgttaatatattatggatccaagagggagaggtccctt
aaggagttcgcagaccatgattttgttatcactacgtattcagttgtcgaaactgaatac
aggaagcatgtgctgccggagaaacaagaatgcccttggtgtggggagttgtttcacgaa
gagttcttgcctcttcaccgagatttcaagtgttatccagaatatgttttgggaaagacg
aagccgttgaaaaagaagaatacagatgctggggtggatgagaggaataaggaagttcta
aagaaagggaagaggttgagtaaggacaaggcctccggagctggttcttctgcaaatgat
tcagaaggagctgataaaggaccacgtgaaagaaattgtaatctgtactccgtggactgg
aaccgcataatcttggatgaggctcaccatatcaaagataatcgaagtagcacttcgcat
gctgttctttccttcaactctacctacaaatgggctctaagtggcactccccttcaaaat
cgtgttggagaactttactcacttatccgcttcctccagatttttccatattcttattac
ttttgcgaggattgtgattgcagaacacctaatagcagtttaattgaatgttcaatttgc
aatcataaaacttatagacacttttgctggtgggacaaatatattacccgaccaataaaa
ttgggaggacatactgggcgtggcagagatgcaatgcttttgctgaagcataagattttg
aaaagtatactccttaggcgtactaaagtgggtagatctgctgatcttgcacttcctccc
aaaatgatctttttacgacgggactcgctggatatcaaggaagaggattacctcagatca
ttgtacaacgatactcaggcccaatttaacacatatgtcacagaaggaactgttatgaat
aactacgccaacatctataatcgcctcacacgtgttcggcaggctttgaatcatccgtac
cttgtggtatactctaaaaatgccctgagccaatcaagtgtggcgaatgatgatggtgaa
gtaaaatgcgggctgtgtcataaatctgtagaagatcctgtggttaatgcatgtggacac
accttctgtcaatcttgtttgatcaacttctcagctagtgcgggacaaggctcatgccct
acatgcttcattacaggttttaagagctcaagtattctcaacagaattcggcttggtgac
tttaagactagtacaaaactagaggctttgagggaagaaattagatttatggttcagagg
gatggtactgcaaaaggagtcgtttttagccaattcccatcattcttggatttgattcac
tattcgctgcagaagtcgggagtccagtgtgttcagttggatggatctacaaatatgaag
gcaagagatactgccatcaaaaggtttaacgaggacccagattgtagattatttctgacg
agcttgaaagcgggagggactgcacttaatctcacagtggcatcacatgtattcttgatg
gacgtgtggtggaatcctgcagttgagcaacaggctcaagatagagtacatagaattggg
cagtttaaacctgtgagggttgtgaggttcgtaatagaaggttcagttgaagaaagaata
ttagagttgcaagagaagaagcaattagtatttgaagggactgttagtgggtcggccgat
gcactgggaaagttatcagagagagacttgaaattcctgttttcaatataa

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