Daucus carota (carrot): 108220366
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Entry
108220366 CDS
T05350
Name
(RefSeq) ATP-dependent helicase rhp16
KO
K15083
DNA repair protein RAD16
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108220366
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
108220366
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
ResIII
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
zf-RING_5
RING_XB3-XBAT31
zf-Nse
Prok-RING_4
zf-UDP
Motif
Other DBs
NCBI-GeneID:
108220366
NCBI-ProteinID:
XP_017249603
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All DBs
Position
1:complement(28710682..28717255)
Genome browser
AA seq
780 aa
AA seq
DB search
MNPNADPSSLLPIKGDDYQQEASLDEADVAMDISDSDGDGDSKELIVGDDTQRRKESPIL
MWKAWEEDYVRWLESVADADTEIDNVNQVLAETAEPPPSLTMPLLRFQKEWLAWALQQEE
SAARGGILADEMGMGKTVQAIALVLAKKELQGAGDGAFPLPSSSLGLPKAKATLVICPPI
AVTQWANEISRVTVTGSQKVLVYYGSKRGKSLHEFLDHDFVITTYSIVQAEYKEYVLPEK
QRCTGCGELFDEGILDYHRAFCVNNPGVDVTQSVYDGKKEPLKKVKGLNKDKAFGAGSST
SDSEGAENRPRPSNYNLYSVDWNRIILDEAHHIKDHRSSTSNAVLFLNSTYKWALSGTPL
QNRVRELYSLIRFLQIFPYSYYFCMECDCIELIYSSLTYCSVCNHTPFSHFCWWDKYVAR
PIQAEGHTGRGRDAMLLLKHKILKSILLRRTKQGRSADLALPPKMIFLRRDSLDIKEDDY
LKSLYNDSRAQYNTYVNEGTIMNNYANIYNLLTRVRQALNHPYLVVYSKNAMSKESSAAN
DGGEVKCGLCHESVKDPLVNDCGHTFCRSCFIDFSASAGQVSCPTCSITGFKSSSILNRI
RLDDFQTSTKLEALREEIRFMIERDGSAKGIVFSQYPSFLDLIHYSLQKSGVQCVQLDGS
TNMKARDIAIKRFNEDPDCILFLMSLKTGGIALNLTAASHVFLMDAWWNPAVEQQAQDRV
HRIGQFKPVRVVKFIIEGSIEERILKLQETKQLLFEGTVSGSADALGKLTEKDIKFLFST
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccaacgccgatcccagttctctacttccgatcaagggagatgattatcagcaa
gaagcaagcttggatgaagctgatgtcgctatggacatttcagattcggatggtgacggt
gatagcaaagaattgattgttggagacgacactcaaaggagaaaggaaagcccaatcttg
atgtggaaagcttgggaagaagactatgtcagatggttagaatctgtcgcagatgcagac
acggagatcgataatgtgaatcaagttctggcggagactgctgaaccaccgcccagttta
actatgcctctgctaagatttcagaaagagtggttagcttgggcgctgcagcaggaggaa
tctgcagcccggggaggcatccttgccgatgagatggggatgggcaagactgtccaggcc
atcgcactggtcctggctaagaaggaacttcaaggagcgggggatggagctttcccccta
ccaagttcatctcttgggttgccaaaagcgaaggcgacccttgtcatatgtcctcccatt
gcggtgacgcaatgggcgaacgagattagccgtgtcacggtgacaggtagccagaaggtg
ttggtctattatggatccaagaggggcaagtcccttcatgaattcttggatcatgatttc
gtgatcaccacgtattcaatcgtccaagctgaatacaaggagtatgtcttgcccgagaaa
caaagatgcacagggtgtggagagttgtttgatgaagggatcctggattatcaccgagct
ttttgtgttaacaatcctggggtggatgttactcagtcggtgtatgacgggaaaaaggaa
cctctaaagaaagtaaagggcttgaataaggataaggcctttggagctggttcttctacc
agtgattcagaaggagctgaaaacagacctcgtccaagcaattataatttgtactccgtg
gactggaaccgaataatattggatgaggctcaccatatcaaagatcatcgaagtagcact
tcgaatgctgttcttttcttaaactctacctacaaatgggctctaagtggcactcccctt
caaaatcgtgttagagaactttactcacttatccgcttcctccagatttttccatattct
tattacttctgtatggagtgtgattgcatagaacttatttacagctctttaacttattgt
tcagtttgcaatcatacacctttcagccacttttgctggtgggataaatatgttgccaga
ccaatacaagcggaaggacatactgggcgtggcagagatgcaatgcttttgctgaagcat
aaaattttgaaaagtatactccttaggcgtactaaacagggcagatctgccgatcttgcg
cttcctcccaaaatgatctttttacgacgggactcactcgatatcaaggaagatgattac
ctcaaatcattgtacaatgattctcgggcccaatataacacatatgtcaacgaaggaact
attatgaataactacgccaatatctacaatctcctcacacgtgtgcgacaggctttgaat
catccgtacctagtggtatactctaaaaatgccatgagcaaagaatcaagtgcggcgaat
gatggtggtgaagtaaaatgtgggctgtgtcatgaatctgtaaaagatcctctggttaat
gattgtggacacaccttttgtcgatcttgtttcatcgacttctcagctagtgcgggacaa
gtctcatgccctacatgcagcattacaggttttaagagctccagtattctcaacagaatt
cggcttgatgacttccagactagtacaaaactagaggctttgagggaagaaattagattt
atgattgagagagatggttctgcaaaaggaatcgtttttagccaatacccatcattcttg
gatttgattcactattctctgcagaagtccggagttcagtgtgttcagttggatggatcg
acgaatatgaaggcgagagatatagccatcaaaagatttaacgaggatccagattgtata
ttatttctgatgagcttgaaaacgggagggattgcacttaatctcacagcggcatcacat
gtattcttgatggacgcgtggtggaatcctgcagttgagcaacaggctcaagatagagta
catagaattgggcagtttaaacccgtgagggttgtgaagttcattatagaaggttcaatc
gaagaaagaatcttaaagttgcaagagacgaagcaattattatttgaagggactgttagt
gggtctgccgatgcactaggaaagttaacagagaaagacataaaattcctgttttcaaca
taa
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