Daucus carota (carrot): 108222708
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Entry
108222708 CDS
T05350
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108222708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108222708
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108222708
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_15
NACHT
SMC_N
AAA_28
AAA_23
AAA
AAA_18
AAA_22
AAA_30
SRP54
AAA_5
AAA_25
PduV-EutP
AAA_24
AAA_33
Zeta_toxin
AAA_14
AAA_16
Arf
ATP-synt_ab
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
108222708
NCBI-ProteinID:
XP_017252082
UniProt:
A0A164Z371
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All DBs
Position
5:35903508..35907356
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AA seq
289 aa
AA seq
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MAREGDESNGIRVKGMQFGYDIQIPLFVDFTLDISPGSRCLLVGANGSGKTTLLKILAGK
HMVGGRDVVQVLNCSAFHDTHLVCSGDLSYLGGSWTKTVGSAGEIPLQGDFSAEHMIFGV
EGIDPVRREKLIDLLDIDLRWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVDLDVVA
RMDLLDFFKEECEQRGATIVYATHIFDGLETWATDLAYIQDGELRRTDKLSELAELKHAA
NLLSVVESWLRSETKIEKKKPVSNSSQVRKSSPFDSSPFRSTRHMAYYR
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagaaggtgacgaaagtaatggcattcgggtcaaggggatgcaattcgggtac
gacatacaaatcccgttatttgttgacttcaccctcgacatctctcccggatctcgatgc
ctcctcgtcggtgccaatggatctggaaagacaacattgctgaagattttggccggaaaa
catatggttggtggaagagatgtagtgcaggtcttaaattgttcagcatttcatgacaca
cacctggtttgtagtggggacttgtcctatttgggaggatcctggacaaaaacagtgggc
tctgcaggtgaaattccacttcaaggagacttctctgctgagcatatgatatttggagtt
gaagggattgaccctgtaagacgtgagaagttgattgatttgcttgatattgatttacga
tggcggatgcacaaggtttctgatggccagcgacgccgagttcaaatatgtatggggctt
cttcatccttttcaggttcttttgttagatgaggttactgttgaccttgatgttgttgca
aggatggatttgctagacttcttcaaggaagagtgtgagcagagaggagctacaattgtg
tatgcaacacacatttttgatggactggagacatgggccacggatctggcttacatacag
gatggagaattaaggaggacagataaattatctgagcttgctgagttaaaacacgctgct
aatctgctttcggtggtcgagtcttggctgcgctctgaaaccaagatagagaaaaagaaa
cctgtcagtaattcatcccaagtcaggaagtcatctcctttcgattcttctccttttaga
tcaaccagacacatggcttactaccgttga
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