Daucus carota (carrot): 108228080
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Entry
108228080 CDS
T05350
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108228080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108228080
Enzymes [BR:
dcr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108228080
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108228080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
MTPAP-like_central
Motif
Other DBs
NCBI-GeneID:
108228080
NCBI-ProteinID:
XP_017259048
LinkDB
All DBs
Position
6:37875016..37896777
Genome browser
AA seq
1179 aa
AA seq
DB search
MSSTKFHVMCSLFNWMQKSKSSAKKRSKFRKFIDNFCKPSDYFSAIRLILPSLDRERGSY
GLKESVLATCLIDALGISRESSDAIRLINWRKGGAKTGASAGNFSQVAAEVLQLRQGTTS
GELTIKELNDMLDRLASSENRAEKTSVLSELIQKTNAQEMKWIVMIILKDLKLGTSEKSI
FHEFHPDAEDLFNVTCDLKLVCEKLSDRSQRHKRQDIEVGKPVRPQLALRVSNAAGAWKK
LHGKEVVVECKFDGDRIQIHKNGEDIHFFSRNFLDHPEYGHAMSKIIQKNVVTDRCILDG
EMLVWDTSTNRFAEFGSNQEIAKAAKEGLENDRQLCYVAFDILYVGDTSVIHQSLKERHE
LIRKVVKPIKGRLEILVPNGSTNVQRPSGEPCWSRIAYSVDDVERFFKEIIDNRDEGIVL
KDLASKWEPSDRSIKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPT
TNSYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKKAAPSFYQVTNNSKERPDV
WIDSPEKSIILSINSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHECLDVQSFIELVHS
SNGTTQREGNQGVLMDDKPKRTKARNVEKNNVTVVPSHFIQTNVSDIKGETLIFSSMMFY
FVNLPPTQSLDSLHRLVAENGGTSSMNLNNTVTHCIAAESKGIKFQAAKLRGDVIHYSWL
FDCCSQKKLLPLKPKYFLHLSEQSKKLLEEEIDEYSDSYFLDLDIVDLKQLLNNVDRLED
SKSVDYYKKKYCPKDKWSCFTGCCIYFHLSTQSLRNPVSKALLELARRRLKLEVSMGGGK
VCSSLSQATHLVIQSLLFVDVGIAGPLNSFSTTDVHHICNNKMHVVGSQWLEDSIESSQR
LSEDTYSIKLEGLEDLNVGECKSELKIEDERDIDDVGKQNLLHSPGKDEKHRKTEAVAVS
YSSDAPSRKRRGRPASTSRKDKKTVKRQPKRLRARVGNKLAKICESESDVDVCLEDTGKE
EESKIDLEMHEIDEMAGRREHVNTVGPDTVKYSESSQRGNVIENMDIEGTERSKWVDTLH
GTGMEERKSIGSNEPEKLEVMVDPVQSLLLDMIPSLGTQTNAVTESKPQPQTNAVTESKP
QPQTNAVTESKPQPSEPNQVPTKKKKVSYKDLAYNLLGD
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcacaaagttccacgtgatgtgcagtctcttcaactggatgcaaaaaagcaaa
tcatctgcaaaaaagcgctcgaaatttcgaaaattcatcgataatttctgcaaacctagc
gattatttcagcgcaattaggttaattctgcctagtttggatcgcgagcgtggctcgtac
ggtctcaaagagtccgtgctcgccacctgtttgattgatgcgctgggcatatcgagagag
tcgagcgatgcgattcggcttattaattggcgaaaaggcggtgcgaagacgggtgcgagt
gctggtaatttctcgcaagttgctgctgaggttttacaactcagacagggaacaacttca
ggagaactaacaattaaggagttaaatgacatgcttgatcgcttggcctcgagcgaaaac
agagcggagaagacctctgttctttctgagctgatccagaaaacaaatgcccaggaaatg
aagtggattgtgatgatcattcttaaagatctaaagttgggaactagtgaaaaaagcatc
tttcacgagttccatccagacgctgaagacttgtttaatgttacatgtgacttgaaacta
gtttgtgaaaaattaagtgacagaagtcagagacataaaagacaggacatagaagttggt
aaacctgtacgcccacaattggctttaagggtcagtaatgcagccggtgcttggaaaaag
ctccatgggaaagaagtggttgttgaatgcaaatttgacggagatcgtatccaaatccac
aagaatggagaagacatacactttttctctcggaactttcttgatcatccagaatatgga
catgcaatgtcaaagattatacaaaaaaatgttgtcactgacaggtgtatacttgacggg
gaaatgctggtttgggacacatctacgaatcgttttgctgaatttggttcaaaccaggaa
atagccaaggccgcaaaagagggacttgaaaatgacagacagttgtgctatgttgcattt
gatatactatatgtaggagacactagtgtgatccatcaaagcttgaaggagaggcacgaa
cttattcggaaggttgtgaagcccataaagggtcgcttggaaattttggttcctaatggg
agtactaatgttcaacgtccttctggggaaccatgttggtctcgtattgcttatagtgtt
gatgatgtcgaaaggtttttcaaagaaattattgacaacagagacgaagggatagtatta
aaggatttggcttccaaatgggaaccaagtgatcggagtataaagtggttgaaattgaag
cctgaatacattagagctggctcagatttggatgttcttatcataggaggatattatggc
tctggacgtcgtggtggtgaggttgctcaatttctggtgggcctggcagagcgtccaaca
acaaattcttatcctagaagattcatctcgttctgcagagtaggtactggactgtcagat
gaagagcttgatgctgtcgtaactaaattgaagccttacttcaggaaatatgagtaccca
aagaaagctgcgccaagcttttatcaagtcactaataactcaaaggaaaggccagatgtc
tggattgatagtcctgaaaaatcaattatactttcaataaacagtgatattcgaacaatt
aggtctgaggtattttctgccccatatagcttgagattcccacgtattgaccgtgtgaga
tatgacaagccctggcatgaatgccttgatgtacagtcttttatagaattagtacattca
agcaatggcaccactcagagggaggggaaccaaggagttttaatggacgacaaacctaaa
cgaacaaaagccagaaatgtagagaaaaacaatgttactgttgttccatctcatttcatt
caaaccaatgtttctgatatcaagggggagacattgatattttcaagcatgatgttttac
tttgtcaatttgcctccgacccagtcgctagattccttgcacagattggtagctgaaaat
gggggcacttcttctatgaatcttaataacactgttactcactgtattgctgccgaaagc
aaagggatcaagtttcaggcagcaaaacttcgaggagatgttattcactactcttggctc
tttgattgttgttcacagaagaagctccttcctttaaaaccaaagtacttcctccacctt
tctgaacaatctaagaaattgttagaggaagagattgatgaatattccgactcgtacttt
ttggatctggacattgtagacctcaaacagcttttaaataacgttgatagattagaagat
tcgaagtctgttgactattacaaaaagaaatactgcccaaaggataaatggtcttgtttt
actggatgctgcatatattttcacctgtcaactcagtctttgaggaatccagtatcgaaa
gctttgctggaacttgcacgaagaaggttgaagcttgaagtttccatgggtggtgggaaa
gtatgcagcagtctttctcaagctacgcatttggttatccagtctctactctttgttgat
gtgggtatagctggtccattaaatagcttctcaaccacagatgtgcatcatatatgtaac
aataaaatgcatgtcgttgggtctcagtggttggaggattctattgagagtagccaaaga
ctaagcgaggatacatatagtataaagctggaaggattagaagatctaaatgttggagag
tgcaaaagtgaactcaaaattgaagatgaacgtgatattgatgatgttgggaagcagaat
ctcttgcattctcctggtaaagatgaaaaacacagaaaaacggaagccgttgcagtcagt
tatagctcagatgcaccgagtaggaaaagaagaggaagacctgctagcacaagtagaaaa
gataagaaaactgttaaacgccagcccaagaggttaagggcgcgagttgggaacaaacta
gcgaaaatatgtgaaagcgagtcagatgttgacgtgtgtttagaagatactgggaaagag
gaagagtctaaaatagacttagaaatgcatgaaatagatgaaatggcgggcaggagggag
catgtaaatactgtaggtcctgatacagtcaaatactctgaatcatcacaaagaggcaat
gtcattgagaatatggatatagaaggcactgaacgtagtaagtgggttgatactcttcat
ggaactggtatggaggagaggaaaagtatcggttcgaatgagcctgaaaagttagaggtg
atggttgatccagtccaaagcctgttgctcgatatgatcccaagtcttgggacgcagact
aatgctgttaccgaaagtaaaccacagccacagactaatgctgttactgaaagtaaacca
cagccacagactaatgctgttactgaaagtaaaccgcagccttcagaacctaatcaagtg
cctacaaaaaagaagaaagttagctataaagatctcgcatataacctccttggggattag
DBGET
integrated database retrieval system
