Dyella caseinilytica: ISN74_10570
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Entry
ISN74_10570 CDS
T07062
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dcs
Dyella caseinilytica
Pathway
dcs03030
DNA replication
dcs03410
Base excision repair
dcs03420
Nucleotide excision repair
dcs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ISN74_10570 (ligA)
03410 Base excision repair
ISN74_10570 (ligA)
03420 Nucleotide excision repair
ISN74_10570 (ligA)
03430 Mismatch repair
ISN74_10570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dcs03032
]
ISN74_10570 (ligA)
03400 DNA repair and recombination proteins [BR:
dcs03400
]
ISN74_10570 (ligA)
Enzymes [BR:
dcs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ISN74_10570 (ligA)
DNA replication proteins [BR:
dcs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ISN74_10570 (ligA)
DNA repair and recombination proteins [BR:
dcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ISN74_10570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ISN74_10570 (ligA)
MMR (mismatch excision repair)
DNA ligase
ISN74_10570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ISN74_10570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QRN51963
LinkDB
All DBs
Position
complement(2451261..2453648)
Genome browser
AA seq
795 aa
AA seq
DB search
MSKQSASPSSALRAETLRKQIEHANYRYHVLDDPEIPDADYDALMRELEALEADHPELIT
PDSPTRRVGARALGGFAEVRHALPMLSLGNAFEQDGGNDRERYRDVSEFERRIEQTLGRR
EPAFSVEPKLDGLAISLRYENGVFVQGATRGDGETGEEVTANLRTVRAIPLRLRGEGWPR
VLEVRGEVIMLRKDFEAFNAYAREHGEKPLANPRNGAAGSLRQLDPAITAKRKLSFYAYA
VGAVEGGELPDTHSKTLQKLREWGFPVSGEVDVATGFDGLIAYFRRIGAKRDKLPYDIDG
VVYKLDDYAGQREMGFVARAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPV
QVAGVTVTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVVRVIPEHRPAQTHAWKMPT
HCPVCGSALVREEGEAAWRCSGGLICAAQRKEALIHFASRRALDIEGIGERFVDALVDFG
YVHTPADLYKLTLNDFLEMKQRADERDGTVPETVKAGKIATKWAENLLQAIEASKKTTLS
RFLYALGIVHIGESTAKTLASWLGRLEWVRSMPAPILRELPDIGDEVAGSIAAFFRQDGN
RAVVDALLAEGITLSDESEPSPRLHQKLSQAVLLENAGINGIGQRNAELLATHFSSMGKL
YSSGSTHWITAGLPQHAAVSLDEFFADTERRSALLEAEAAMHRLLAAAPQADVVTALPLA
GQTAVLTGTLSGMGRDEAKEKLEALGAKVAGSVSKKTSFVVAGEAAGSKLDKAQELGVEV
WDEARLLDLFKQHGI
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacagtcagcctccccttcgtcggccctgcgtgcagaaacactgcgcaaacag
atcgaacacgccaattaccgttatcacgtactcgacgatccagagatccccgacgccgat
tacgacgccctgatgcgcgagcttgaagcgctggaagccgatcacccagagctgatcacg
cccgattcgcccacacgccgcgttggcgcgcgggcgctgggcggctttgccgaagtgcgg
cacgcgttgcccatgctgtcactgggcaacgccttcgagcaggatggcggcaacgaccgc
gaacgctatcgcgatgtgtccgaattcgagcgccgcatcgagcagacgctgggacgccgc
gaaccggcgttttccgtggagcccaagctggatggcctggcgatcagcttgcgctacgaa
aacggtgtgttcgtgcagggcgcaacccgtggcgacggtgaaaccggcgaagaggtgacc
gccaatctgcgtacggtccgtgctattccgctacgcctgcgtggcgaaggttggccacgt
gtgttggaagtgcgcggcgaggtgatcatgcttcgcaaggatttcgaggcgttcaacgct
tacgcacgggagcacggtgaaaaaccgctggcgaatccgcgcaatggcgcggccggttcg
ctgcggcagcttgatcctgctatcacagccaagcgcaagctgagcttctacgcatatgcg
gtgggtgcagtggaaggcggcgagctgccggacacacattcgaagaccttgcagaaattg
cgcgagtgggggtttcccgtttccggagaggtggatgtcgcgacaggtttcgatggtctg
atcgcttatttcaggcgcatcggcgccaagcgcgacaaactgccgtacgacattgatggt
gtggtctacaagctggacgactatgccggtcagcgcgagatgggctttgtcgcgcgtgcg
ccgcgctgggcgattgcgcacaaatttccggcgcaggagcaaagcaccaccgtcgaggct
atcgagatccagatcggccgcaccggcgcggccacgcctgtagcccggcttgcacccgtt
caggtggctggcgtgacggtcaccaatgcaaccttgcataacgcagatcaagtggcgcgg
ctggatgtgcgggtgggcgacacggtgatcgtgcgccgcgcgggtgatgtgattcccgaa
gtggtgcgcgtgattcccgagcatcgcccagcccaaacacatgcctggaaaatgcccacg
cattgtccggtctgtggatcggcgttggtgcgcgaggaaggtgaggcggcgtggcgctgc
tcgggcggattgatctgcgcagcacagcgcaaggaagccctcatccatttcgcctcgcgt
cgcgctctggatatcgagggtatcggtgagcgctttgtcgatgccctggtggattttggc
tacgtgcacacaccggcggatctctacaaactcacgctcaatgatttcctggaaatgaaa
cagcgcgccgacgagcgcgatggcaccgtgccggagaccgtgaaggccggcaagatcgcc
accaagtgggcggaaaacctgttgcaggcgattgaagccagcaagaagaccacgctgtcc
cgcttcctgtatgcgctgggcatcgtgcatatcggcgaaagtacggccaagacgctggcc
agctggttggggcgtctggaatgggtgcgcagcatgccggcgccgatcttgcgcgagctg
ccggatatcggtgacgaggttgccggctcgatcgccgcgttttttcgacaggatggtaac
cgtgcggtagtcgatgcgctgctcgctgaaggcatcacgttgagcgatgagtcggagcct
tcaccgcgtcttcaccagaaactgagccaggccgtgttgctggaaaacgccggcatcaat
ggcatcgggcaacgtaacgccgaactgctggcgacacatttctccagtatgggcaaactg
tattcgagtggcagcacgcactggatcaccgcaggtttgccgcagcatgcggcggtcagt
cttgacgaatttttcgctgatacggaacgacgatccgccttgctggaagcggaagccgcc
atgcatcgcctgcttgctgccgctccccaggcggatgtggtgacggcgctgccgctcgcg
ggacagactgccgtgcttaccggcacactctccggcatggggcgggatgaggccaaggaa
aagctcgaagcgctcggtgcaaaagtggctggcagcgtatccaagaaaaccagttttgtg
gtcgcaggcgaagcagccggttccaaactcgacaaggctcaggaattgggcgtcgaggta
tgggacgaagcgcgcttgctggatctgtttaaacagcacggaatctga
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