KEGG   Dendrobium catenatum: 110094380
Entry
110094380         CDS       T05027                                 
Name
(RefSeq) 5'-3' exoribonuclease 4
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
dct  Dendrobium catenatum
Pathway
dct04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:dct00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    110094380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dct03019]
    110094380
Messenger RNA biogenesis [BR:dct03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     110094380
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 110094380
NCBI-ProteinID: XP_020675267
LinkDB
Position
Unknown
AA seq 925 aa
MGVPAFYRWLADRYPLAIVDVIEEEPTEAPGRATVSVDPSAPNPNGIEFDNLYLDMNGII
HPCFHPEGRPAPATYDDVFKSIFEYIDHLFGLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAASEEERLRQEFEGAKQLCLMDKRETSDSNVITPGTRFMAALSVALQYYIQL
RLGHCHGWKSVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLS
LATHEIHFYILREMVSLPGHQGKCFLCGQVGHLAAECRSKSKENASGGGDKALDDTPIYK
KKYQFLNVWVLREYLEYDLQITDPPFAINFERLIDDFVFMCFFVGNDFLPHMPTLEIREG
AINLLMFVYKREFAAMGGYLTDAGDVSLERVEHFIQSVAVYEEQIFRKRVRIQQAMENNE
DLKLKTHRESCEDGLIVDKIKLGEPGYKERYYAEKFGEESVKSIEEVKKDLVQKYVEGLC
WIMRYYYEGVCSWQWFYPYHYAPFASDLNGLADLEVTFFLGHPFKPFDQLMGTLPASSSE
ALPKRYGDLMTNPVSPLNSFYPEDFEIDMNGKKFAWQGVAKLPFIDERRLLSETRKLENS
LTEEERFRNKIMFDIIYVNINHPLAIQVASLYQMISQLGMQGAFQIKIDTTLSGGMNGFL
CLTERNNYSSSVYNLNNNFVLNATYFNPLPHPHIPEPPKHVFFPAKILKPYDIKPFPVLW
HEENSSSRQKARERPQVSGAISGLLLGEASHRLVKNSLQIKANSAGLLDTPYNRKHSYSS
GKTRAAGPSGFEGGFQNPNFDHHRHTHNSRDFANPWPAQSSEPQNMRNNFGIIEPFIPQD
QYNIGRGMSQLSVQDGPKYRLQQRITPPSTHQNTGPLPPPPPTNWIGDHMASLYKQPSQQ
QQSVQKVAYRIKQRPSQNIEYSYPQ
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgggagttccggcgttttaccgttggcttgccgatcgctatcctctggcgattgtcgat
gtgatcgaggaggagccgacggaggcccccggcagagcgaccgtctccgtcgatccctct
gcgccgaacccgaacggaatcgagtttgacaatctctacctcgacatgaatggcattatc
catccttgtttccacccggagggcaggcctgcacctgcaacctatgatgatgttttcaag
tcaatttttgaatatattgatcatctcttcggactggttcgcccaagaaagctattatat
atggcaatagatggtgttgccccccgggccaaaatgaatcagcagcgcacccggcgtttt
agggctgcaaaagatgcggccgaagctgcatctgaagaggaaaggctgaggcaggagttt
gagggagcaaaacaattgtgtctgatggataagcgtgagacatctgactcaaatgttata
acccctgggactcgatttatggctgcactatctgttgcacttcaatattacatacaattg
aggttgggacactgtcatgggtggaaatctgttaaggtaatattatctgatgcaaatgtt
cccggcgagggtgaacacaaaataatgtcctacatacggttacagcgtaatcttcctggc
ttcgatccaaatacgcgccattgtttgtatggcttggatgcagacttgattatgctatct
ttggctactcatgagattcatttctatattctgagggagatggtgtcattgccagggcat
caggggaaatgttttttgtgcggtcaggttgggcatcttgccgcagagtgtagaagcaag
tctaaggaaaatgcttctggcggtggcgacaaagctctagatgacacccctatctacaaa
aagaaatatcagttcctaaacgtttgggtcttgcgagaatatttggagtatgatttgcag
ataacagatccaccatttgcaattaactttgaacgacttatagacgatttcgtgtttatg
tgcttttttgttggaaatgattttcttccgcatatgccgacattggaaatccgtgagggt
gcaattaacctactcatgtttgtgtataagagggagtttgctgctatgggtggctatcta
acagatgctggtgatgtttcattggagagggtggagcattttattcagtcagttgctgta
tatgaagaacaaatatttaggaaacgtgttcgtatccagcaagcgatggagaacaatgaa
gatttgaagctcaaaacccacagagaaagttgtgaggatggtttaatcgtagacaagatc
aaattgggggaaccgggatataaagaaaggtactatgctgagaagtttggagaagagtct
gttaagtcaattgaagaagtgaagaaagatctcgttcaaaaatatgttgaaggactctgt
tggatcatgagatattattatgaaggtgtctgctcctggcagtggttttacccatatcat
tatgctccctttgcttctgatctcaacggcctggctgatttggaggtcacgtttttccta
ggtcatccatttaaaccttttgatcaattaatgggaacattaccagcttccagctctgaa
gctctgcccaaacgctatggtgatctaatgactaatccagtttcacctttaaattctttt
tatcctgaagattttgagattgatatgaatggtaaaaagtttgcatggcagggggttgca
aaattgccgtttattgatgaaagacgcttgttatctgaaacaagaaagcttgaaaattca
ttgacggaggaggaaagatttagaaataagataatgttcgacataatttatgtcaatatt
aatcatcctttggccattcaagttgcttcactatatcaaatgatatctcaattgggaatg
caaggagcatttcaaattaaaatagacactactctcagcggtggaatgaatggcttcctt
tgtctgacagagagaaacaattacagctcatcagtatacaatcttaacaataattttgtt
ttgaatgctacttattttaatcctttgccccatcctcacatccctgaacctcctaagcat
gtcttttttcctgcaaagattttaaaaccatatgatatcaagccattccctgtactttgg
catgaagaaaacagtagctcacggcagaaagcaagagagaggccacaggtatcaggagcc
atttctggcctacttttaggagaagcatcgcacagacttgtgaagaactcattgcagatc
aaagccaacagtgcagggctgcttgacaccccatataataggaaacattcatattcttcc
ggcaagacgagagctgccggaccgtcaggattcgaaggaggcttccaaaacccaaacttc
gatcaccatcgacatacccacaactcccgagatttcgcaaacccatggccagctcagtca
agcgagccgcagaatatgagaaacaatttcggtataattgaaccgttcattcctcaagat
cagtataacattggaagaggaatgtcgcaattgtcagtgcaagatggaccaaaatatcga
ttgcaacaaaggataacaccaccaagtactcatcagaatacaggtcctctgcctccacca
cctccaaccaactggattggcgaccatatggcttctctttataagcaaccatcgcaacaa
caacaatctgtgcagaaagtagcttatcggattaagcaacggccatcacaaaatatagag
tacagttatcctcagtga

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